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Structure paper

TitleCrystallographic evidence for a new ensemble of ligand-induced allosteric transitions in hemoglobin: the T-to-T(high) quaternary transitions.
Journal, issue, pagesBiochemistry, Vol. 44, Page 6101-6121, Year 2005
Publish dateNov 8, 2004 (structure data deposition date)
AuthorsKavanaugh, J.S. / Rogers, P.H. / Arnone, A.
External linksBiochemistry / PubMed:15835899
MethodsX-ray diffraction
Resolution1.8 - 4.5 Å
Structure data

PDB-1xxt:
The T-to-T High Transitions in Human Hemoglobin: wild-type deoxy Hb A (low salt, one test set)
Method: X-RAY DIFFRACTION / Resolution: 1.91 Å

PDB-1xy0:
T-to-THigh Transitions in Human Hemoglobin: alphaK40G deoxy low-salt
Method: X-RAY DIFFRACTION / Resolution: 1.99 Å

PDB-1xz5:
T-to-THigh Quaternary Transitions in Human Hemoglobin: alphaL91A deoxy low-salt
Method: X-RAY DIFFRACTION / Resolution: 2.11 Å

PDB-1xz7:
T-to-THigh Quaternary Transitions in Human Hemoglobin: alphaR92A deoxy low-salt
Method: X-RAY DIFFRACTION / Resolution: 1.9 Å

PDB-1xzu:
T-to-THigh Quaternary Transitions in Human Hemoglobin: alphaD94G deoxy low-salt
Method: X-RAY DIFFRACTION / Resolution: 2.16 Å

PDB-1xzv:
T-to-THigh Quaternary Transitions in Human Hemoglobin: alphaP95A deoxy low-salt
Method: X-RAY DIFFRACTION / Resolution: 2.11 Å

PDB-1y09:
T-to-T(High) Quaternary Transitions in Human Hemoglobin: alphaN97A deoxy low-salt
Method: X-RAY DIFFRACTION / Resolution: 2.25 Å

PDB-1y0a:
T-to-THigh Quaternary Transitions in Human Hemoglobin: alphaY140A deoxy low-salt
Method: X-RAY DIFFRACTION / Resolution: 2.22 Å

PDB-1y0c:
T-to-THigh Quaternary Transitions in Human Hemoglobin: alphaY140F deoxy low-salt
Method: X-RAY DIFFRACTION / Resolution: 2.3 Å

PDB-1y0d:
T-to-THigh Quaternary Transitions in Human Hemoglobin: desArg141alpha deoxy low-salt
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-1y0t:
T-to-T(High) Quaternary Transitions in Human Hemoglobin: betaV1M deoxy low-salt (1 test set)
Method: X-RAY DIFFRACTION / Resolution: 2.14 Å

PDB-1y0w:
T-to-THigh quaternary Transitions in Human Hemoglobin: betaV1M deoxy low-salt (10 test sets)
Method: X-RAY DIFFRACTION / Resolution: 2.14 Å

PDB-1y22:
T-To-T(High) quaternary transitions in human hemoglobin: betaV33A deoxy low-salt (1 test set)
Method: X-RAY DIFFRACTION / Resolution: 2.16 Å

PDB-1y2z:
T-To-T(High) quaternary transitions in human hemoglobin: betaV34G deoxy low-salt (1 test set)
Method: X-RAY DIFFRACTION / Resolution: 2.07 Å

PDB-1y31:
T-To-T(High) quaternary transitions in human hemoglobin: betaY35A deoxy low-salt (1 test set)
Method: X-RAY DIFFRACTION / Resolution: 2.13 Å

PDB-1y35:
T-To-T(High) quaternary transitions in human hemoglobin: betaY35F deoxy low-salt (1 test set)
Method: X-RAY DIFFRACTION / Resolution: 2.12 Å

PDB-1y45:
T-To-T(high) quaternary transitions in human hemoglobin: betaP36A deoxy low-salt (10 test sets)
Method: X-RAY DIFFRACTION / Resolution: 2.0 Å

PDB-1y46:
T-To-T(High) quaternary transitions in human hemoglobin: betaW37Y deoxy low-salt (10 test sets)
Method: X-RAY DIFFRACTION / Resolution: 2.22 Å

PDB-1y4b:
T-To-T(High) quaternary transitions in human hemoglobin: betaW37H deoxy low-salt (10 test sets)
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-1y4f:
T-To-T(High) quaternary transitions in human hemoglobin: betaW37A deoxy low-salt (10 test sets)
Method: X-RAY DIFFRACTION / Resolution: 2.0 Å

PDB-1y4g:
T-To-T(High) quaternary transitions in human hemoglobin: betaW37G deoxy low-salt (10 test sets)
Method: X-RAY DIFFRACTION / Resolution: 1.91 Å

PDB-1y4p:
T-To-T(high) quaternary transitions in human hemoglobin: betaW37E deoxy low-salt (10 test sets)
Method: X-RAY DIFFRACTION / Resolution: 1.98 Å

PDB-1y4q:
T-To-T(High) quaternary transitions in human hemoglobin: betaF42A deoxy low-salt (1 test set)
Method: X-RAY DIFFRACTION / Resolution: 2.11 Å

PDB-1y4r:
T-To-T(High) quaternary transitions in human hemoglobin: betaF45A deoxy low-salt (1 test set)
Method: X-RAY DIFFRACTION / Resolution: 2.22 Å

PDB-1y4v:
T-To-T(High) quaternary transitions in human hemoglobin: betaC93A deoxy low-salt (1 test set)
Method: X-RAY DIFFRACTION / Resolution: 1.84 Å

PDB-1y5f:
T-To-T(High) quaternary transitions in human hemoglobin: betaL96A deoxy low-salt (1 test set)
Method: X-RAY DIFFRACTION / Resolution: 2.14 Å

PDB-1y5j:
T-To-T(High) quaternary transitions in human hemoglobin: betaH97A deoxy low-salt (1 test set)
Method: X-RAY DIFFRACTION / Resolution: 2.03 Å

PDB-1y5k:
T-To-T(High) quaternary transitions in human hemoglobin: betaD99A deoxy low-salt (10 test sets)
Method: X-RAY DIFFRACTION / Resolution: 2.2 Å

PDB-1y7c:
T-To-T(High) quaternary transitions in human hemoglobin: betaP100A deoxy low-salt (1 test set)
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-1y7d:
T-To-T(High) quaternary transitions in human hemoglobin: betaP100G deoxy low-salt (1 test set)
Method: X-RAY DIFFRACTION / Resolution: 1.9 Å

PDB-1y7g:
T-To-T(high) quaternary transitions in human hemoglobin: betaN102A deoxy low-salt (1 test set)
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-1y7z:
T-To-T(High) quaternary transitions in human hemoglobin: betaN108A deoxy low-salt (1 test set)
Method: X-RAY DIFFRACTION / Resolution: 1.98 Å

PDB-1y83:
T-To-T(High) quaternary transitions in human hemoglobin: betaY145G deoxy low-salt (1 test set)
Method: X-RAY DIFFRACTION / Resolution: 1.9 Å

PDB-1y85:
T-To-T(High) quaternary transitions in human hemoglobin: desHIS146beta deoxy low-salt
Method: X-RAY DIFFRACTION / Resolution: 2.13 Å

PDB-1y8w:
T-To-T(High) quaternary transitions in human hemoglobin: alphaR92A oxy (2mM IHP, 20% PEG) (10 test sets)
Method: X-RAY DIFFRACTION / Resolution: 2.9 Å

PDB-1ydz:
T-To-T(High) quaternary transitions in human hemoglobin: alphaY140F oxy (2MM IHP, 20% PEG) (1 test set)
Method: X-RAY DIFFRACTION / Resolution: 3.3 Å

PDB-1ye0:
T-To-T(High) quaternary transitions in human hemoglobin: betaV33A oxy (2MM IHP, 20% PEG) (1 test set)
Method: X-RAY DIFFRACTION / Resolution: 2.5 Å

PDB-1ye1:
T-To-T(High) quaternary transitions in human hemoglobin: betaY35A oxy (2MM IHP, 20% PEG) (1 test set)
Method: X-RAY DIFFRACTION / Resolution: 4.5 Å

PDB-1ye2:
T-To-T(High) quaternary transitions in human hemoglobin: betaY35F oxy (2MM IHP, 20% PEG) (1 test set)
Method: X-RAY DIFFRACTION / Resolution: 1.8 Å

PDB-1yen:
T-To-T(High) quaternary transitions in human hemoglobin: betaP36A oxy (2MM IHP, 20% PEG) (10 test sets)
Method: X-RAY DIFFRACTION / Resolution: 2.8 Å

PDB-1yeo:
T-To-T(High) quaternary transitions in human hemoglobin: betaW37A OXY (10 test sets)
Method: X-RAY DIFFRACTION / Resolution: 2.22 Å

PDB-1yeq:
T-To-T(High) quaternary transitions in human hemoglobin: betaW37Y OXY (10 test sets)
Method: X-RAY DIFFRACTION / Resolution: 2.75 Å

PDB-1yeu:
T-To-T(High) quaternary transitions in human hemoglobin: betaW37G OXY (10 test sets)
Method: X-RAY DIFFRACTION / Resolution: 2.12 Å

PDB-1yev:
T-To-T(High) quaternary transitions in human hemoglobin: betaW37E OXY (10 test sets)
Method: X-RAY DIFFRACTION / Resolution: 2.11 Å

PDB-1yg5:
T-To-T(High) quaternary transitions in human hemoglobin: betaW37H OXY (2MM IHP, 20% PEG) (10 test sets)
Method: X-RAY DIFFRACTION / Resolution: 2.7 Å

PDB-1ygd:
T-To-T(High) quaternary transitions in human hemoglobin: betaW37E alpha zinc beta oxy (10 TEST SETS)
Method: X-RAY DIFFRACTION / Resolution: 2.73 Å

PDB-1ygf:
T-to-T(high) quaternary transitions in human hemoglobin: betaH97A oxy (2MM IHP, 20% PEG) (1 test set)
Method: X-RAY DIFFRACTION / Resolution: 2.7 Å

PDB-1yh9:
T-to-T(High) quaternary transitions in human hemoglobin: HbA OXY (2MM IHP, 20% PEG) (10 test sets)
Method: X-RAY DIFFRACTION / Resolution: 2.2 Å

PDB-1yhe:
T-To-T(High) quaternary transitions in human hemoglobin: HbA OXY (5.0MM IHP, 20% PEG) (10 test sets)
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-1yhr:
T-To-T(High) quaternary transitions in human hemoglobin: HbA OXY (10.0MM IHP, 20% PEG) (10 test sets)
Method: X-RAY DIFFRACTION / Resolution: 2.6 Å

PDB-1yie:
T-to-thigh quaternary transitions in human hemoglobin: betaW37A oxy (2.2MM IHP, 13% PEG) (1 test set)
Method: X-RAY DIFFRACTION / Resolution: 2.4 Å

PDB-1yih:
T-to-T(High) quaternary transitions in human hemoglobin: betaP100A oxy (2.2MM IHP, 20% PEG) (1 test set)
Method: X-RAY DIFFRACTION / Resolution: 2.0 Å

Chemicals

ChemComp-HEM:
PROTOPORPHYRIN IX CONTAINING FE / Heme B

ChemComp-HOH:
WATER / Water

ChemComp-OXY:
OXYGEN MOLECULE / Oxygen

ChemComp-ZNH:
PROTOPORPHYRIN IX CONTAINING ZN

Source
  • homo sapiens (human)
KeywordsTRANSPORT PROTEIN / hemoglobin tetramer / globin fold / hemoglobin mutant / globin / HEMOGLOBIN / OXYGEN STORAGE/TRANSPORT / OXYGEN STORAGE-TRANSPORT COMPLEX

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