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Structure paper

TitleProbing the antibody-catalyzed water-oxidation pathway at atomic resolution.
Journal, issue, pagesProc. Natl. Acad. Sci. USA, Vol. 110, Page 2247-2252, Year 2004
Publish dateDec 11, 2003 (structure data deposition date)
AuthorsZhu, X. / Wentworth Jr., P. / Wentworth, A.D. / Eschenmoser, A. / Lerner, R.A. / Wilson, I.A.
External linksProc. Natl. Acad. Sci. USA / PubMed:14982995
MethodsX-ray diffraction
Resolution1.4 - 2.5 Å
Structure data

PDB-1ru9:
Crystal Structure (A) of u.v.-irradiated cationic cyclization antibody 4C6 Fab at pH 4.6 with a data set collected in-house.
Method: X-RAY DIFFRACTION / Resolution: 2.5 Å

PDB-1rua:
Crystal structure (B) of u.v.-irradiated cationic cyclization antibody 4C6 fab at pH 4.6 with a data set collected at SSRL beamline 11-1.
Method: X-RAY DIFFRACTION / Resolution: 1.75 Å

PDB-1ruk:
Crystal structure (C) of native cationic cyclization antibody 4C6 fab at pH 4.6 with a data set collected at SSRL beamline 9-1
Method: X-RAY DIFFRACTION / Resolution: 1.4 Å

PDB-1rul:
Crystal Structure (D) of u.v.-irradiated cationic cyclization antibody 4C6 Fab at pH 5.6 with a data set collected at SSRL beamline 11-1.
Method: X-RAY DIFFRACTION / Resolution: 1.88 Å

PDB-1rum:
Crystal structure (F) of H2O2-soaked cationic cyclization antibody 4C6 fab at pH 8.5 with a data set collected at SSRL beamline 9-1.
Method: X-RAY DIFFRACTION / Resolution: 1.48 Å

PDB-1rup:
Crystal structure (G) of native cationic cyclization antibody 4C6 fab at pH 8.5 with a data set collected at APS beamline 19-ID
Method: X-RAY DIFFRACTION / Resolution: 1.4 Å

PDB-1ruq:
Crystal Structure (H) of u.v.-irradiated Diels-Alder antibody 13G5 Fab at pH 8.0 with a data set collected in house.
Method: X-RAY DIFFRACTION / Resolution: 1.86 Å

PDB-1rur:
Crystal Structure (I) of native Diels-Alder antibody 13G5 Fab at pH 8.0 with a data set collected at SSRL beamline 9-1.
Method: X-RAY DIFFRACTION / Resolution: 1.5 Å

Chemicals

ChemComp-GOL:
GLYCEROL

ChemComp-ACT:
ACETATE ION

ChemComp-BEZ:
BENZOIC ACID

ChemComp-HOH:
WATER

ChemComp-ZN:
Unknown entry

Source
  • mus musculus (house mouse)
KeywordsIMMUNE SYSTEM / immunoglobulin / catalytic antibody / water oxidation / amino acid modification

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