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Structure paper

TitleInsights into the mechanism of Drosophila melanogaster Golgi alpha-mannosidase II through the structural analysis of covalent reaction intermediates.
Journal, issue, pagesJ. Biol. Chem., Vol. 278, Page 48074-48083, Year 2003
Publish dateSep 2, 2003 (structure data deposition date)
AuthorsNumao, S. / Kuntz, D.A. / Withers, S.G. / Rose, D.R.
External linksJ. Biol. Chem. / PubMed:12960159
MethodsX-ray diffraction
Resolution1.2 - 2.03 Å
Structure data

PDB-1qwn:
GOLGI ALPHA-MANNOSIDASE II Covalent Intermediate Complex with 5-fluoro-gulosyl-fluoride
Method: X-RAY DIFFRACTION / Resolution: 1.2 Å

PDB-1qwu:
Golgi alpha-mannosidase II D341N mutant complex with 5-F-guloside
Method: X-RAY DIFFRACTION / Resolution: 2.03 Å

PDB-1qx1:
Golgi alpha-mannosidase II D341N mutant complex with 2-F-mannosyl-F
Method: X-RAY DIFFRACTION / Resolution: 1.3 Å

Chemicals

ChemComp-NAG:
2-acetamido-2-deoxy-beta-D-glucopyranose

ChemComp-ZN:
Unknown entry

ChemComp-GUL:
(2R,3S,4R,5S)-2,6-difluoro-2-(hydroxymethyl)oxane-3,4,5-triol

ChemComp-TRS:
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL / pH buffer*YM

ChemComp-MPD:
(4S)-2-METHYL-2,4-PENTANEDIOL / precipitant*YM

ChemComp-HOH:
WATER

ChemComp-FMF:
2-deoxy-2-fluoro-beta-D-mannopyranosyl fluoride

Source
  • drosophila melanogaster (fruit fly)
KeywordsHYDROLASE / N-TERMINAL ALPHA-BETA DOMAIN / THREE HELIX BUNDLE / 2 C-TERMINAL BETA BARRELS / Family 38 Glycosyl hydrolase / glycosyl hydrolase family 38 / covalent catalytic intermediate

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