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Structure methods	All X-ray diffraction NMR electron microscopy small angle scattering neutron diffraction fiber diffraction powder diffraction infrared spectroscopy EPR fluorescence transfer theoretical model Hybrid
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IF	>30 >20 >10 >5 all

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Structure paper

Title	Structural analysis of a set of proteins resulting from a bacterial genomics project
Journal, issue, pages	Proteins, Vol. 60, Page 787-796, Year 2005
Publish date	Oct 23, 2003 (structure data deposition date)
Authors	Badger, J. / Sauder, J.M. / Adams, J.M. / Antonysamy, S. / Bain, K. / Bergseid, M.G. / Buchanan, S.G. / Buchanan, M.D. / Batiyenko, Y. / Christopher, J.A. ...Badger, J. / Sauder, J.M. / Adams, J.M. / Antonysamy, S. / Bain, K. / Bergseid, M.G. / Buchanan, S.G. / Buchanan, M.D. / Batiyenko, Y. / Christopher, J.A. / Emtage, S. / Eroshkina, A. / Feil, I. / Furlong, E.B. / Gajiwala, K.S. / Gao, X. / He, D. / Hendle, J. / Huber, A. / Hoda, K. / Kearins, P. / Kissinger, C. / Laubert, B. / Lewis, H.A. / Lin, J. / Loomis, K. / Lorimer, D. / Louie, G. / Maletic, M. / Marsh, C.D. / Miller, I. / Molinari, J. / Muller-Dieckmann, H.J. / Newman, J.M. / Noland, B.W. / Pagarigan, B. / Park, F. / Peat, T.S. / Post, K.W. / Radojicic, S. / Ramos, A. / Romero, R. / Rutter, M.E. / Sanderson, W.E. / Schwinn, K.D. / Tresser, J. / Winhoven, J. / Wright, T.A. / Wu, L. / Xu, J. / Harris, T.J.
External links	Proteins / PubMed:16021622
Methods	X-ray diffraction
Resolution	1.34 - 3 Å
Structure data	PDB-1o60: Crystal structure of KDO-8-phosphate synthase Method: X-RAY DIFFRACTION / Resolution: 1.8 Å PDB-1o61: Crystal structure of a PLP-dependent enzyme with PLP Method: X-RAY DIFFRACTION / Resolution: 1.9 Å PDB-1o62: Crystal structure of the apo form of a PLP-dependent enzyme Method: X-RAY DIFFRACTION / Resolution: 2.1 Å PDB-1o63: Crystal structure of an ATP phosphoribosyltransferase Method: X-RAY DIFFRACTION / Resolution: 2.0 Å PDB-1o64: Crystal structure of an ATP phosphoribosyltransferase Method: X-RAY DIFFRACTION / Resolution: 2.1 Å PDB-1o65: Crystal structure of an hypothetical protein Method: X-RAY DIFFRACTION / Resolution: 2.33 Å PDB-1o66: Crystal structure of 3-methyl-2-oxobutanoate hydroxymethyltransferase Method: X-RAY DIFFRACTION / Resolution: 1.75 Å PDB-1o67: Crystal structure of an hypothetical protein Method: X-RAY DIFFRACTION / Resolution: 2.54 Å PDB-1o68: Crystal structure of 3-methyl-2-oxobutanoate hydroxymethyltransferase Method: X-RAY DIFFRACTION / Resolution: 2.1 Å PDB-1o69: Crystal structure of a PLP-dependent enzyme Method: X-RAY DIFFRACTION / Resolution: 1.84 Å PDB-1o6b: Crystal structure of phosphopantetheine adenylyltransferase with ADP Method: X-RAY DIFFRACTION / Resolution: 2.2 Å PDB-1o6c: Crystal structure of UDP-N-acetylglucosamine 2-epimerase Method: X-RAY DIFFRACTION / Resolution: 2.9 Å PDB-1o6d: Crystal structure of a hypothetical protein Method: X-RAY DIFFRACTION / Resolution: 1.66 Å PDB-1vgt: Crystal structure of 4-diphosphocytidyl-2C-methyl-D-erythritol synthase Method: X-RAY DIFFRACTION / Resolution: 1.8 Å PDB-1vgu: Crystal structure of 4-diphosphocytidyl-2C-methyl-D-erythritol synthase Method: X-RAY DIFFRACTION / Resolution: 2.8 Å PDB-1vgv: Crystal structure of UDP-N-acetylglucosamine_2 epimerase Method: X-RAY DIFFRACTION / Resolution: 2.31 Å PDB-1vgw: Crystal structure of 4-diphosphocytidyl-2C-methyl-D-erythritol synthase Method: X-RAY DIFFRACTION / Resolution: 2.35 Å PDB-1vgx: Crystal structure of a autoinducer-2 synthesis protein Method: X-RAY DIFFRACTION / Resolution: 1.9 Å PDB-1vgy: Crystal structure of succinyl diaminopimelate desuccinylase Method: X-RAY DIFFRACTION / Resolution: 1.9 Å PDB-1vgz: Crystal structure of 4-diphosphocytidyl-2C-methyl-D-erythritol synthase Method: X-RAY DIFFRACTION / Resolution: 3.0 Å PDB-1vh0: Crystal structure of a hypothetical protein Method: X-RAY DIFFRACTION / Resolution: 2.31 Å PDB-1vh1: Crystal structure of CMP-KDO synthetase Method: X-RAY DIFFRACTION / Resolution: 2.6 Å PDB-1vh2: Crystal structure of a autoinducer-2 synthesis protein Method: X-RAY DIFFRACTION / Resolution: 2.0 Å PDB-1vh3: Crystal structure of CMP-KDO synthetase Method: X-RAY DIFFRACTION / Resolution: 2.7 Å PDB-1vh4: Crystal structure of a stabilizer of iron transporter Method: X-RAY DIFFRACTION / Resolution: 1.75 Å PDB-1vh5: Crystal structure of a putative thioesterase Method: X-RAY DIFFRACTION / Resolution: 1.34 Å PDB-1vh6: Crystal structure of a flagellar protein Method: X-RAY DIFFRACTION / Resolution: 2.5 Å PDB-1vh7: Crystal structure of a cyclase subunit of imidazolglycerolphosphate synthase Method: X-RAY DIFFRACTION / Resolution: 1.9 Å PDB-1vh8: Crystal structure of a 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase Method: X-RAY DIFFRACTION / Resolution: 2.35 Å PDB-1vh9: Crystal structure of a putative thioesterase Method: X-RAY DIFFRACTION / Resolution: 2.15 Å PDB-1vha: Crystal structure of 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase Method: X-RAY DIFFRACTION / Resolution: 2.35 Å PDB-1vhc: Crystal structure of a putative KHG/KDPG aldolase Method: X-RAY DIFFRACTION / Resolution: 1.89 Å PDB-1vhd: Crystal structure of an iron containing alcohol dehydrogenase Method: X-RAY DIFFRACTION / Resolution: 1.6 Å PDB-1vhe: Crystal structure of a aminopeptidase/glucanase homolog Method: X-RAY DIFFRACTION / Resolution: 1.9 Å PDB-1vhf: Crystal structure of periplasmic divalent cation tolerance protein Method: X-RAY DIFFRACTION / Resolution: 1.54 Å PDB-1vhg: Crystal structure of ADP compounds hydrolase Method: X-RAY DIFFRACTION / Resolution: 2.7 Å PDB-1vhj: Crystal structure of purine nucleoside phosphorylase Method: X-RAY DIFFRACTION / Resolution: 2.23 Å PDB-1vhk: Crystal structure of an hypothetical protein Method: X-RAY DIFFRACTION / Resolution: 2.6 Å PDB-1vhl: Crystal structure of dephospho-CoA kinase with adenosine-5'-diphosphate Method: X-RAY DIFFRACTION / Resolution: 1.65 Å PDB-1vhm: Crystal structure of an hypothetical protein Method: X-RAY DIFFRACTION / Resolution: 2.1 Å PDB-1vho: Crystal structure of a putative peptidase/endoglucanase Method: X-RAY DIFFRACTION / Resolution: 1.86 Å PDB-1vhq: Crystal structure of enhancing lycopene biosynthesis protein 2 Method: X-RAY DIFFRACTION / Resolution: 1.65 Å PDB-1vhs: Crystal structure of a putative phosphinothricin N-acetyltransferase Method: X-RAY DIFFRACTION / Resolution: 1.8 Å PDB-1vht: Crystal structure of dephospho-coA kinase with bis(adenosine)-5'-triphosphate Method: X-RAY DIFFRACTION / Resolution: 1.59 Å PDB-1vhu: Crystal structure of a putative phosphoesterase Method: X-RAY DIFFRACTION / Resolution: 1.34 Å PDB-1vhv: Crystal structure of diphthine synthase Method: X-RAY DIFFRACTION / Resolution: 1.75 Å PDB-1vhw: Crystal structure of purine nucleoside phosphorylase with adenosine Method: X-RAY DIFFRACTION / Resolution: 1.54 Å PDB-1vhx: Crystal structure of Putative Holliday junction resolvase Method: X-RAY DIFFRACTION / Resolution: 1.96 Å PDB-1vhy: Crystal structure of Haemophilus influenzae protein HI0303, Pfam DUF558 Method: X-RAY DIFFRACTION / Resolution: 1.9 Å PDB-1vhz: Crystal structure of ADP compounds hydrolase Method: X-RAY DIFFRACTION / Resolution: 2.32 Å PDB-1vi0: Crystal structure of a transcriptional regulator Method: X-RAY DIFFRACTION / Resolution: 1.65 Å PDB-1vi1: Crystal structure of a fatty acid/phospholipid synthesis protein Method: X-RAY DIFFRACTION / Resolution: 2.95 Å PDB-1vi2: Crystal structure of shikimate-5-dehydrogenase with NAD Method: X-RAY DIFFRACTION / Resolution: 2.1 Å PDB-1vi3: Crystal structure of an hypothetical protein Method: X-RAY DIFFRACTION / Resolution: 1.76 Å PDB-1vi4: Crystal structure of Regulator of ribonuclease activity A protein 1 Method: X-RAY DIFFRACTION / Resolution: 1.87 Å PDB-1vi5: Crystal structure of ribosomal protein S2P Method: X-RAY DIFFRACTION / Resolution: 2.65 Å PDB-1vi6: Crystal structure of ribosomal protein S2P Method: X-RAY DIFFRACTION / Resolution: 1.95 Å PDB-1vi8: Crystal structure of a putative thioesterase Method: X-RAY DIFFRACTION / Resolution: 2.2 Å PDB-1vi9: Crystal structure of pyridoxamine kinase Method: X-RAY DIFFRACTION / Resolution: 1.96 Å PDB-1via: Crystal structure of shikimate kinase Method: X-RAY DIFFRACTION / Resolution: 1.57 Å PDB-1vic: Crystal structure of CMP-KDO synthetase Method: X-RAY DIFFRACTION / Resolution: 1.8 Å PDB-1vim: Crystal structure of an hypothetical protein Method: X-RAY DIFFRACTION / Resolution: 1.36 Å PDB-1viq: Crystal structure of putative ADP ribose pyrophosphatase Method: X-RAY DIFFRACTION / Resolution: 2.4 Å PDB-1vis: Crystal structure of mevalonate kinase Method: X-RAY DIFFRACTION / Resolution: 2.69 Å PDB-1viu: Crystal structure of putative ADP ribose pyrophosphatase Method: X-RAY DIFFRACTION / Resolution: 2.4 Å PDB-1viv: Crystal structure of a hypothetical protein Method: X-RAY DIFFRACTION / Resolution: 2.6 Å PDB-1vix: Crystal structure of a putative peptidase T Method: X-RAY DIFFRACTION / Resolution: 2.5 Å PDB-1viy: Crystal structure of dephospho-CoA kinase Method: X-RAY DIFFRACTION / Resolution: 1.89 Å PDB-1viz: Crystal structure of an hypothetical protein Method: X-RAY DIFFRACTION / Resolution: 1.85 Å
Chemicals	ChemComp-HOH: WATER / Water ChemComp-ACT: ACETATE ION / Acetate ChemComp-PLP: PYRIDOXAL-5'-PHOSPHATE / Pyridoxal phosphate ChemComp-BME: BETA-MERCAPTOETHANOL / 2-Mercaptoethanol ChemComp-PO4: PHOSPHATE ION / Phosphate ChemComp-GOL: GLYCEROL / Glycerol ChemComp-NA: Unknown entry ChemComp-KIV: 3-METHYL-2-OXOBUTANOIC ACID / Alpha-Ketoisovaleric acid ChemComp-X04: (2-AMINO-4-FORMYL-5-HYDROXY-6-METHYLPYRIDIN-3-YL)METHYL DIHYDROGEN PHOSPHATE ChemComp-MG: Unknown entry ChemComp-CL: Unknown entry / Chloride ChemComp-ADP: ADENOSINE-5'-DIPHOSPHATE / ADP, energy-carrying moleculeYM / Adenosine diphosphate ChemComp-UD1: URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE ChemComp-ZN: Unknown entry ChemComp-SO4: SULFATE ION / Sulfate ChemComp-CMK: CYTIDINE 5'-MONOPHOSPHATE 3-DEOXY-BETA-D-GULO-OCT-2-ULO-PYRANOSONIC ACID ChemComp-POP: PYROPHOSPHATE 2- / Pyrophosphate ChemComp-ACY: ACETIC ACID / Acetic acid ChemComp-MN: Unknown entry ChemComp-CAC: CACODYLATE ION / Cacodylic acid ChemComp-NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE / Nicotinamide adenine dinucleotide phosphate ChemComp-MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID / pH bufferYM / MES (buffer) ChemComp-BA3: BIS(ADENOSINE)-5'-TRIPHOSPHATE ChemComp-ADN: ADENOSINE / Adenosine ChemComp-APR: ADENOSINE-5-DIPHOSPHORIBOSE ChemComp-DCC: DODECYL-COA ChemComp-NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE / NADYM / Nicotinamide adenine dinucleotide ChemComp-FMT: FORMIC ACID / Formic acid ChemComp-DIO*: 1,4-DIETHYLENE DIOXIDE / 1,4-Dioxane
Source	haemophilus influenzae (bacteria) campylobacter jejuni (Campylobacter) thermotoga maritima (bacteria) escherichia coli (E. coli) neisseria meningitidis serogroup b (bacteria) bacillus subtilis (bacteria) neisseria gonorrhoeae (bacteria) deinococcus radiodurans (radioresistant) neisseria meningitidis (bacteria) staphylococcus aureus (bacteria) vibrio cholerae (bacteria) archaeoglobus fulgidus (archaea) methanocaldococcus jannaschii (archaea)
Keywords	TRANSFERASE / structural genomics / unknown function / ISOMERASE / HYDROLASE / PROTEIN BINDING PROTEIN / PSI / Protein Structure Initiative / New York SGX Research Center for Structural Genomics / NYSGXRC / LYASE / OXIDOREDUCTASE / TRANSCRIPTION / RIBOSOME

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