Database of articles cited by EMDB/PDB/SASBDB data

Keywords
Structure methods	All X-ray diffraction NMR electron microscopy small angle scattering neutron diffraction fiber diffraction powder diffraction infrared spectroscopy EPR fluorescence transfer theoretical model Hybrid
Author
Journal
IF	>30 >20 >10 >5 all

Title	RNA catalysis emerges from dynamic structural ensembles
Journal, issue, pages	Nature, Year 2026
Publish date	Nov 26, 2025 (structure data deposition date)
Authors	Degenhardt MFS / Degenhardt HF / Bhoge BA / Lee Y-T / Yu P / Zhang J / Deme JC / Stagno JR / Wang Y-X
External links	Nature / Search PubMed
Methods	EM (single particle)
Resolution	2.86 - 3.9 Å
Structure data	74074 9zdv EMDB-74074, PDB-9zdv: Cryo-EM structure of RNase P RNA from Geobacillus stearothermophilus, conformer 51 Method: EM (single particle) / Resolution: 3.3 Å 74131 9zf2 EMDB-74131, PDB-9zf2: Cryo-EM structure of RNase P RNA from Geobacillus stearothermophilus, conformer 1 Method: EM (single particle) / Resolution: 2.9 Å 74132 9zf3 EMDB-74132, PDB-9zf3: Cryo-EM structure of RNase P RNA from Geobacillus stearothermophilus, conformer 48 Method: EM (single particle) / Resolution: 3.0 Å 74133 9zf5 EMDB-74133, PDB-9zf5: Cryo-EM structure of RNase P RNA from Geobacillus stearothermophilus, conformer 49 Method: EM (single particle) / Resolution: 3.1 Å 74137 9zf9 EMDB-74137, PDB-9zf9: Cryo-EM structure of RNase P RNA from Geobacillus stearothermophilus, conformer 55 Method: EM (single particle) / Resolution: 3.9 Å 74140 9zfc EMDB-74140, PDB-9zfc: Cryo-EM structure of RNase P RNA from Geobacillus stearothermophilus, conformer 2 Method: EM (single particle) / Resolution: 2.9 Å 74141 9zfd EMDB-74141, PDB-9zfd: Cryo-EM structure of RNase P RNA from Geobacillus stearothermophilus, conformer 3 Method: EM (single particle) / Resolution: 2.93 Å 74195 9zgm EMDB-74195, PDB-9zgm: Cryo-EM structure of RNase P RNA from Geobacillus stearothermophilus, conformer 4 Method: EM (single particle) / Resolution: 3.01 Å 74196 9zgn EMDB-74196, PDB-9zgn: Cryo-EM structure of RNase P RNA from Geobacillus stearothermophilus, conformer 5 Method: EM (single particle) / Resolution: 2.9 Å 74197 9zgo EMDB-74197, PDB-9zgo: Cryo-EM structure of RNase P RNA from Geobacillus stearothermophilus, conformer 6 Method: EM (single particle) / Resolution: 3.0 Å 74198 9zgp EMDB-74198, PDB-9zgp: Cryo-EM structure of RNase P RNA from Geobacillus stearothermophilus, conformer 7 Method: EM (single particle) / Resolution: 2.86 Å 74199 9zgq EMDB-74199, PDB-9zgq: Cryo-EM structure of RNase P RNA from Geobacillus stearothermophilus, conformer 8 Method: EM (single particle) / Resolution: 2.9 Å 74200 9zgr EMDB-74200, PDB-9zgr: Cryo-EM structure of RNase P RNA from Geobacillus stearothermophilus, conformer 9 Method: EM (single particle) / Resolution: 2.93 Å 74201 9zgs EMDB-74201, PDB-9zgs: Cryo-EM structure of RNase P RNA from Geobacillus stearothermophilus, conformer 10 Method: EM (single particle) / Resolution: 2.91 Å 74202 9zgt EMDB-74202, PDB-9zgt: Cryo-EM structure of RNase P RNA from Geobacillus stearothermophilus, conformer 11 Method: EM (single particle) / Resolution: 3.0 Å 74203 9zgu EMDB-74203, PDB-9zgu: Cryo-EM structure of RNase P RNA from Geobacillus stearothermophilus, conformer 12 Method: EM (single particle) / Resolution: 3.3 Å 74204 9zgv EMDB-74204, PDB-9zgv: Cryo-EM structure of RNase P RNA from Geobacillus stearothermophilus, conformer 14 Method: EM (single particle) / Resolution: 2.93 Å 74205 9zgw EMDB-74205, PDB-9zgw: Cryo-EM structure of RNase P RNA from Geobacillus stearothermophilus, conformer 13 Method: EM (single particle) / Resolution: 2.98 Å 74206 9zgx EMDB-74206, PDB-9zgx: Cryo-EM structure of RNase P RNA from Geobacillus stearothermophilus, conformer 15 Method: EM (single particle) / Resolution: 2.9 Å 74207 9zgy EMDB-74207, PDB-9zgy: Cryo-EM structure of RNase P RNA from Geobacillus stearothermophilus, conformer 16 Method: EM (single particle) / Resolution: 2.9 Å 74208 9zgz EMDB-74208, PDB-9zgz: Cryo-EM structure of RNase P RNA from Geobacillus stearothermophilus, conformer 17 Method: EM (single particle) / Resolution: 2.9 Å 74209 9zh0 EMDB-74209, PDB-9zh0: Cryo-EM structure of RNase P RNA from Geobacillus stearothermophilus, conformer 18 Method: EM (single particle) / Resolution: 2.9 Å 74213 9zh1 EMDB-74213, PDB-9zh1: Cryo-EM structure of RNase P RNA from Geobacillus stearothermophilus, conformer 19 Method: EM (single particle) / Resolution: 3.0 Å 74215 9zh2 EMDB-74215, PDB-9zh2: Cryo-EM structure of RNase P RNA from Geobacillus stearothermophilus, conformer 20 Method: EM (single particle) / Resolution: 3.0 Å 74223 9zh5 EMDB-74223, PDB-9zh5: Cryo-EM structure of RNase P RNA from Geobacillus stearothermophilus, conformer 21 Method: EM (single particle) / Resolution: 2.94 Å 74224 9zh7 EMDB-74224, PDB-9zh7: Cryo-EM structure of RNase P RNA from Geobacillus stearothermophilus, conformer 22 Method: EM (single particle) / Resolution: 2.89 Å 74226 9zh9 EMDB-74226, PDB-9zh9: Cryo-EM structure of RNase P RNA from Geobacillus stearothermophilus, conformer 23 Method: EM (single particle) / Resolution: 3.0 Å 74227 9zha EMDB-74227, PDB-9zha: Cryo-EM structure of RNase P RNA from Geobacillus stearothermophilus, conformer 24 Method: EM (single particle) / Resolution: 3.0 Å 74228 9zhb EMDB-74228, PDB-9zhb: Cryo-EM structure of RNase P RNA from Geobacillus stearothermophilus, conformer 25 Method: EM (single particle) / Resolution: 2.9 Å 74229 9zhc EMDB-74229, PDB-9zhc: Cryo-EM structure of RNase P RNA from Geobacillus stearothermophilus, conformer 26 Method: EM (single particle) / Resolution: 2.93 Å 74230 9zhd EMDB-74230, PDB-9zhd: Cryo-EM structure of RNase P RNA from Geobacillus stearothermophilus, conformer 27 Method: EM (single particle) / Resolution: 2.9 Å 74231 9zhe EMDB-74231, PDB-9zhe: Cryo-EM structure of RNase P RNA from Geobacillus stearothermophilus, conformer 28 Method: EM (single particle) / Resolution: 2.9 Å 74232 9zhf EMDB-74232, PDB-9zhf: Cryo-EM structure of RNase P RNA from Geobacillus stearothermophilus, conformer 29 Method: EM (single particle) / Resolution: 2.88 Å 74235 9zhg EMDB-74235, PDB-9zhg: Cryo-EM structure of RNase P RNA from Geobacillus stearothermophilus, conformer 30 Method: EM (single particle) / Resolution: 2.9 Å 74237 9zhi EMDB-74237, PDB-9zhi: Cryo-EM structure of RNase P RNA from Geobacillus stearothermophilus, conformer 31 Method: EM (single particle) / Resolution: 2.9 Å 74238 9zhj EMDB-74238, PDB-9zhj: Cryo-EM structure of RNase P RNA from Geobacillus stearothermophilus, conformer 32 Method: EM (single particle) / Resolution: 2.9 Å 74239 9zhk EMDB-74239, PDB-9zhk: Cryo-EM structure of RNase P RNA from Geobacillus stearothermophilus, conformer 33 Method: EM (single particle) / Resolution: 3.03 Å 74261 9zi5 EMDB-74261, PDB-9zi5: Cryo-EM structure of RNase P RNA from Geobacillus stearothermophilus, conformer 47 Method: EM (single particle) / Resolution: 2.96 Å 74263 9zi6 EMDB-74263, PDB-9zi6: Cryo-EM structure of RNase P RNA from Geobacillus stearothermophilus, conformer 52 Method: EM (single particle) / Resolution: 3.2 Å 74264 9zi7 EMDB-74264, PDB-9zi7: Cryo-EM structure of RNase P RNA from Geobacillus stearothermophilus, conformer 54 Method: EM (single particle) / Resolution: 3.3 Å 74284 9ziu EMDB-74284, PDB-9ziu: Cryo-EM structure of Geobacillus stearothermophilus RNase P holoenzyme in 1 mM Mg2+, conformer 16 Method: EM (single particle) / Resolution: 3.45 Å 74285 9ziv EMDB-74285, PDB-9ziv: Cryo-EM structure of Geobacillus stearothermophilus RNase P holoenzyme in 1 mM Mg2+, conformer 17 Method: EM (single particle) / Resolution: 3.5 Å 74286 9ziw EMDB-74286, PDB-9ziw: Cryo-EM structure of Geobacillus stearothermophilus RNase P holoenzyme in 1 mM Mg2+, conformer 18 Method: EM (single particle) / Resolution: 3.4 Å 74287 9zix EMDB-74287, PDB-9zix: Cryo-EM structure of Geobacillus stearothermophilus RNase P holoenzyme in 1 mM Mg2+, conformer 20 Method: EM (single particle) / Resolution: 3.68 Å 74288 9ziy EMDB-74288, PDB-9ziy: Cryo-EM structure of Geobacillus stearothermophilus RNase P holoenzyme in 1 mM Mg2+, conformer 21 Method: EM (single particle) / Resolution: 3.3 Å 74289 9ziz EMDB-74289, PDB-9ziz: Cryo-EM structure of Geobacillus stearothermophilus RNase P holoenzyme in 1 mM Mg2+, conformer 19 Method: EM (single particle) / Resolution: 3.24 Å
Chemicals	ChemComp-MG: Unknown entry ChemComp-HOH: WATER
Source	geobacillus stearothermophilus (bacteria)
Keywords	RNA / RNase P RNA / Geobacillus stearothermophilus / catalytic RNA / cryo-EM structure / conformational heterogeneity / RNA/HYDROLASE / ribozyme / RNase P / RNA-Hydrolase complex / RNase P.