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TitleInterprotomer communication and functional asymmetry in H/ACA snoRNPs.
Journal, issue, pagesProc Natl Acad Sci U S A, Vol. 122, Issue 51, Page e2514683122, Year 2025
Publish dateDec 23, 2025
AuthorsHemendra Singh Panwar / Timothy J Vos / Xiaoyan Xie / H Josh Jang / Hyoungjoo Lee / Ryan D Sheldon / Evan J Worden / Ute Kothe /
PubMed AbstractH/ACA small nucleolar ribonucleoproteins (H/ACA snoRNPs) facilitate essential cellular processes such as RNA modification, folding, and stability. Here, we present multiple cryo-EM structures of ...H/ACA small nucleolar ribonucleoproteins (H/ACA snoRNPs) facilitate essential cellular processes such as RNA modification, folding, and stability. Here, we present multiple cryo-EM structures of endogenous insect H/ACA snoRNPs containing two protomers assembled on a two-hairpin H/ACA snoRNA. By characterizing key protein-protein and protein-RNA interactions, we reveal the coordination of pseudouridylation activity across the two protomers which explains the predominance of two-hairpin structures in eukaryotic H/ACA snoRNAs. Moreover, we found that several mutations in H/ACA proteins associated with dyskeratosis congenita (DC) directly impair pseudouridine formation suggesting how these mutations disrupt RNA modification and ribosome biogenesis in this disease. Additionally, we uncover coordinated structural changes between Nop10, Nhp2, and the N-terminal extensions of Cbf5 in the 3' protomer that resemble active and inactive conformations and may regulate H/ACA snoRNP activity. In summary, this study provides detailed insight into the structure and function of RNA modification-competent H/ACA snoRNPs, which play pivotal roles in cellular processes including ribosome biogenesis, rRNA folding, (m)RNA modification, and telomere maintenance.
External linksProc Natl Acad Sci U S A / PubMed:41410763
MethodsEM (single particle)
Resolution2.86 - 3.23 Å
Structure data

EMDB-72897, PDB-9yfl:
insect H/ACA snoRNP class I
Method: EM (single particle) / Resolution: 2.9 Å

EMDB-72898, PDB-9yfm:
insect H/ACA snoRNP class II composite
Method: EM (single particle) / Resolution: 2.95 Å

EMDB-72899: insect H/ACA snoRNP class II Consensus map
Method: EM (single particle) / Resolution: 2.86 Å

EMDB-72900: insect class II H/ACA snoRNP - Focused map 3'half
Method: EM (single particle) / Resolution: 2.95 Å

EMDB-72901: insect class II H/ACA - Focused map 5' half
Method: EM (single particle) / Resolution: 2.95 Å

EMDB-72902, PDB-9yfn:
insect H/ACA snoRNP class III
Method: EM (single particle) / Resolution: 3.14 Å

EMDB-72903, PDB-9yfo:
insect H/ACA snoRNP class IV
Method: EM (single particle) / Resolution: 3.23 Å

Source
  • trichoplusia ni (cabbage looper)
KeywordsRNA BINDING PROTEIN / Pseudouridine synthase / enzyme complex / snoRNA / snoRNP

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