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TitleIn-cell structures visualize human pre-ribosome assembly in the nucleolus.
Journal, issue, pagesScience, Page eaej0483, Year 2026
Publish dateSep 24, 2026
AuthorsXiaohan Zhao / Yuki Hayashi / Herman K H Fung / Sara Cuylen-Haering / Julia Mahamid / Christoph W Müller /
PubMed AbstractIn eukaryotes, ribosome biogenesis initiates within the nucleolus, a hallmark multilayered compartment of the nucleus. Structures of pre-ribosomes have been characterized ex situ, but their assembly ...In eukaryotes, ribosome biogenesis initiates within the nucleolus, a hallmark multilayered compartment of the nucleus. Structures of pre-ribosomes have been characterized ex situ, but their assembly pathways within human nucleoli have not been described. Here, we used cryogenic correlative light and electron tomography to visualize molecular landscapes within HeLa cell nucleoli and obtained in-cell structural snapshots of both ribosomal subunit precursors, the SSU processome and the pre-60S. These recapitulate major states resolved previously ex situ and reveal additional critical interaction partners, including the RNA exosome, rixosome, and nuclear export receptor CRM1-RanGTP. We further show how pre-ribosome assembly landscapes are altered upon RNA polymerase I inhibition. Our study combines molecular structures with cellular context to elucidate the spatiotemporal assembly pathway of the human ribosome.
External linksScience / PubMed:42784657
MethodsEM (subtomogram averaging)
Resolution6.9 - 19.4 Å
Structure data

EMDB-58993: In-cell structure of the human SSU processome state A'
Method: EM (subtomogram averaging) / Resolution: 8.8 Å

EMDB-59048: In-cell structure of the human SSU processome state preA1-exo
Method: EM (subtomogram averaging) / Resolution: 11.4 Å

EMDB-59068: In-cell structure of the human pre-60S state A
Method: EM (subtomogram averaging) / Resolution: 10.9 Å

EMDB-59069: In-cell structure of the human pre-60S state B
Method: EM (subtomogram averaging) / Resolution: 19.4 Å

EMDB-59070: In-cell structure of the human pre-60S state C
Method: EM (subtomogram averaging) / Resolution: 12.0 Å

EMDB-59071: In-cell structure of the human pre-60S state D
Method: EM (subtomogram averaging) / Resolution: 7.7 Å

EMDB-59072: In-cell structure of the human pre-60S state E
Method: EM (subtomogram averaging) / Resolution: 8.9 Å

EMDB-59073: In-cell structure of the human pre-60S state F
Method: EM (subtomogram averaging) / Resolution: 8.4 Å

EMDB-59074: In-cell structure of the human pre-60S state G
Method: EM (subtomogram averaging) / Resolution: 7.6 Å

EMDB-59075: In-cell structure of the human pre-60S state G*
Method: EM (subtomogram averaging) / Resolution: 9.5 Å

EMDB-59076: In-cell structure of the human SSU processome state A
Method: EM (subtomogram averaging) / Resolution: 8.5 Å

EMDB-59077: In-cell structure of the human SSU processome state preA1
Method: EM (subtomogram averaging) / Resolution: 9.3 Å

EMDB-59078: In-cell structure of the human SSU processome state postA1-exo
Method: EM (subtomogram averaging) / Resolution: 14.1 Å

EMDB-59079: In-cell structure of the human SSU processome state postA1
Method: EM (subtomogram averaging) / Resolution: 10.8 Å

EMDB-59080: In-cell structure of the human pre-60S state Ipre
Method: EM (subtomogram averaging) / Resolution: 8.8 Å

EMDB-59081: In-cell structure of the human pre-60S state Ipost
Method: EM (subtomogram averaging) / Resolution: 8.8 Å

EMDB-59082: In-cell structure of the human pre-60S state J
Method: EM (subtomogram averaging) / Resolution: 7.1 Å

EMDB-59083: In-cell structure of the human pre-60S state K
Method: EM (subtomogram averaging) / Resolution: 7.3 Å

EMDB-59084: In-cell structure of the human pre-60S state KCRM1
Method: EM (subtomogram averaging) / Resolution: 7.7 Å

EMDB-59085: In-cell structure of the human pre-60S state L
Method: EM (subtomogram averaging) / Resolution: 7.8 Å

EMDB-59086: In-cell structure of the human SSU processome consensus map
Method: EM (subtomogram averaging) / Resolution: 8.2 Å

EMDB-59087: In-cell structure of the human Pre-60S consensus map
Method: EM (subtomogram averaging) / Resolution: 6.9 Å

EMDB-59088: In-cell structure of the human pre-60S state H
Method: EM (subtomogram averaging) / Resolution: 7.2 Å

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  • Homo sapiens (human)

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