EMDB/PDB/SASBDBから引用されている文献のデータベース

キーワード
構造解析手法	All X線回折 NMR 電子顕微鏡小角散乱中性子線回折線維回折粉末回折赤外分光 EPR FRET 理論モデルハイブリッド
著者・登録者
ジャーナル
IF	>30 >20 >10 >5 all

タイトル	ApaH decaps Np 4 N-capped RNAs in two alternative orientations.
ジャーナル・号・ページ	Nat. Chem. Biol., Year 2025
掲載日	2025年5月7日 (構造データの登録日)
著者	Nuthanakanti, A. / Korn, M. / Levenson-Palmer, R. / Wu, Y. / Babu, N.R. / Huang, X. / Banh, R.S. / Belasco, J.G. / Serganov, A.
リンク	Nat. Chem. Biol. / PubMed:40789943
手法	X線回折
解像度	1.5 - 2.23 Å
構造データ	PDB-9ojd: Crystal structure of E. coli diadenosine tetraphosphate hydrolase (ApaH) 手法: X-RAY DIFFRACTION / 解像度: 1.77 Å PDB-9ojp: Crystal structure of E. coli ApaH bound to Manganese ions 手法: X-RAY DIFFRACTION / 解像度: 1.68 Å PDB-9ojq: Crystal structure of E. coli ApaH in complex with ADP, active state 手法: X-RAY DIFFRACTION / 解像度: 2 Å PDB-9ojw: Crystal structure of E. coli ApaH in complex with ADP, inactive state 手法: X-RAY DIFFRACTION / 解像度: 1.96 Å PDB-9ojx: Crystal structure of E. coli ApaH in complex with GDP 手法: X-RAY DIFFRACTION / 解像度: 1.83 Å PDB-9ok1: Crystal structure of E. coli ApaH in complex with CDP 手法: X-RAY DIFFRACTION / 解像度: 1.81 Å PDB-9ok2: Crystal structure of E. coli ApaH in complex with UDP 手法: X-RAY DIFFRACTION / 解像度: 1.66 Å PDB-9oln: Crystal structure of E. coli ApaH in complex with NAD+ 手法: X-RAY DIFFRACTION / 解像度: 1.98 Å PDB-9oly: Crystal structure of E. coli ApaH D37A mutant, apo form 手法: X-RAY DIFFRACTION / 解像度: 2.23 Å PDB-9olz: Crystal structure of E. coli ApaH in complex with Ap4A 手法: X-RAY DIFFRACTION / 解像度: 1.71 Å PDB-9om9: Crystal structure of E. coli ApaH in complex with AppCH2ppA 手法: X-RAY DIFFRACTION / 解像度: 1.77 Å PDB-9omc: Crystal structure of E. coli ApaH in complex with Gp4G 手法: X-RAY DIFFRACTION / 解像度: 2.05 Å PDB-9omu: Crystal structure of E. coli ApaH in complex with Ap4G 手法: X-RAY DIFFRACTION / 解像度: 1.55 Å PDB-9omw: Crystal structure of E. coli ApaH in complex with Ap4U 手法: X-RAY DIFFRACTION / 解像度: 1.56 Å PDB-9omx: Crystal structure of E. coli ApaH in complex with Up4U 手法: X-RAY DIFFRACTION / 解像度: 1.54 Å PDB-9on0: Crystal structure of E. coli ApaH D37A mutant in complex with Ap4U 手法: X-RAY DIFFRACTION / 解像度: 1.83 Å PDB-9on7: Crystal structure of E. coli ApaH in complex with ppAG 手法: X-RAY DIFFRACTION / 解像度: 1.79 Å PDB-9ond: Crystal structure of E. coli ApaH in complex with ppAGG 手法: X-RAY DIFFRACTION / 解像度: 2.16 Å PDB-9ong: Crystal structure of E. coli ApaH in complex with Ap4AG 手法: X-RAY DIFFRACTION / 解像度: 1.89 Å PDB-9oon: Crystal structure of E. coli ApaH in complex with Ap4GU 手法: X-RAY DIFFRACTION / 解像度: 1.88 Å PDB-9ooy: Crystal structure of E. coli ApaH in complex with Gp4AU 手法: X-RAY DIFFRACTION / 解像度: 1.88 Å PDB-9op2: Crystal structure of E. coli ApaH in complex with Ap4GUAA 手法: X-RAY DIFFRACTION / 解像度: 1.5 Å PDB-9opg: Crystal structure of E. coli ApaH in complex with Ap4UG 手法: X-RAY DIFFRACTION / 解像度: 1.74 Å PDB-9oph: Crystal structure of E. coli ApaH in complex with Up4AG 手法: X-RAY DIFFRACTION / 解像度: 1.66 Å PDB-9oq9: Crystal structure of E. coli ApaH in complex with Ap4AGG 手法: X-RAY DIFFRACTION / 解像度: 1.96 Å PDB-9oqb: Crystal structure of E. coli ApaH in complex with Up4AGG 手法: X-RAY DIFFRACTION / 解像度: 2.04 Å
化合物	ChemComp-MN: Unknown entry ChemComp-MG: Unknown entry ChemComp-EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID / pH緩衝剤YM ChemComp-HOH: WATER ChemComp-SO4: SULFATE ION ChemComp-ADP: ADENOSINE-5'-DIPHOSPHATE / ADP, エネルギー貯蔵分子YM ChemComp-GOL: GLYCEROL ChemComp-GDP: GUANOSINE-5'-DIPHOSPHATE / GDP, エネルギー貯蔵分子YM ChemComp-CDP: CYTIDINE-5'-DIPHOSPHATE ChemComp-UDP: URIDINE-5'-DIPHOSPHATE / UDPYM ChemComp-NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE / NADYM ChemComp-B4P: BIS(ADENOSINE)-5'-TETRAPHOSPHATE PDB-1ccp: X-RAY STRUCTURES OF RECOMBINANT YEAST CYTOCHROME C PEROXIDASE AND THREE HEME-CLEFT MUTANTS PREPARED BY SITE-DIRECTED MUTAGENESIS ChemComp-BKP: 5'-O-[(S)-hydroxy{[(S)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]oxy}phosphoryl]guanosine PDB-1if9: Carbonic Anhydrase II Complexed With N-[2-(1H-Indol-5-yl)-butyl]-4-sulfamoyl-benzamide PDB-1l89: SIMILAR HYDROPHOBIC REPLACEMENTS OF LEU 99 AND PHE 153 WITHIN THE CORE OF T4 LYSOZYME HAVE DIFFERENT STRUCTURAL AND THERMODYNAMIC CONSEQUENCES PDB-1cc9: Unknown entry ChemComp-U: URIDINE-5'-MONOPHOSPHATE ChemComp-FLC*: CITRATE ANION
由来	escherichia coli k-12 (大腸菌) synthetic construct (人工物)
キーワード	HYDROLASE / ApaH / symmetrical hydrolase / RNA decapping