タイトル | d-Alanine-d-alanine ligase as a model for the activation of ATP-grasp enzymes by monovalent cations. |
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ジャーナル・号・ページ | J. Biol. Chem., Vol. 295, Page 7894-7904, Year 2020 |
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掲載日 | 2019年8月15日 (構造データの登録日) |
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著者 | Pederick, J.L. / Thompson, A.P. / Bell, S.G. / Bruning, J.B. |
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リンク | J. Biol. Chem. / PubMed:32335509 |
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手法 | X線回折 |
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解像度 | 1.67 - 2.4 Å |
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構造データ | PDB-6u1c: Apo form of Thermus thermophilus D-alanine-D-alanine ligase 手法: X-RAY DIFFRACTION / 解像度: 2.2 Å PDB-6u1d: Thermus thermophilus D-alanine-D-alanine ligase in complex with ATP, D-alanine-D-alanine, Mg2+ and Rb+ 手法: X-RAY DIFFRACTION / 解像度: 1.9 Å PDB-6u1e: Thermus thermophilus D-alanine-D-alanine ligase in complex with ATP, D-alanine-D-alanine, Mg2+ and Rb+ 手法: X-RAY DIFFRACTION / 解像度: 2.1 Å PDB-6u1f: Thermus thermophilus D-alanine-D-alanine ligase in complex with ATP, D-alanine-D-alanine, Mg2+ and Cs+ 手法: X-RAY DIFFRACTION / 解像度: 2.3 Å PDB-6u1g: Thermus thermophilus D-alanine-D-alanine ligase in complex with ATP, D-alanine-D-alanine, Mg2+ and Cs+ 手法: X-RAY DIFFRACTION / 解像度: 2.4 Å PDB-6u1h: Thermus thermophilus D-alanine-D-alanine ligase in complex with ADP, phosphate, Mg2+ and K+ 手法: X-RAY DIFFRACTION / 解像度: 2.2 Å PDB-6u1i: Thermus thermophilus D-alanine-D-alanine ligase in complex with ADP, phosphorylated D-cycloserine, Mg2+ and K+ 手法: X-RAY DIFFRACTION / 解像度: 2.3 Å PDB-6u1j: Thermus thermophilus D-alanine-D-alanine ligase in complex with ADP, phosphate, D-ala-D-ala, Mg2+ and K+ 手法: X-RAY DIFFRACTION / 解像度: 2.2 Å PDB-6u1k: Thermus thermophilus D-alanine-D-alanine ligase in complex with ADP, carbonate, D-alanine-D-alanine, Mg2+ and K+ 手法: X-RAY DIFFRACTION / 解像度: 1.67 Å |
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化合物 | ChemComp-DS0: [(4R)-4-azanyl-4,5-dihydro-1,2-oxazol-3-yl] dihydrogen phosphate
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由来 | ![](img/tx_bacteria.gif) thermus thermophilus (strain hb8 / atcc 27634 / dsm 579) (バクテリア)
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キーワード | LIGASE / ATP-grasp domain / ATP binding / metal binding |
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