タイトル | Substrate recognition and mechanism revealed by ligand-bound polyphosphate kinase 2 structures. |
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ジャーナル・号・ページ | Proc. Natl. Acad. Sci. U.S.A., Vol. 115, Page 3350-3355, Year 2018 |
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掲載日 | 2016年6月20日 (構造データの登録日) |
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著者 | Parnell, A.E. / Mordhorst, S. / Kemper, F. / Giurrandino, M. / Prince, J.P. / Schwarzer, N.J. / Hofer, A. / Wohlwend, D. / Jessen, H.J. / Gerhardt, S. ...Parnell, A.E. / Mordhorst, S. / Kemper, F. / Giurrandino, M. / Prince, J.P. / Schwarzer, N.J. / Hofer, A. / Wohlwend, D. / Jessen, H.J. / Gerhardt, S. / Einsle, O. / Oyston, P.C.F. / Andexer, J.N. / Roach, P.L. |
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リンク | Proc. Natl. Acad. Sci. U.S.A. / PubMed:29531036 |
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手法 | X線回折 |
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解像度 | 1.903 - 2.903 Å |
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構造データ | PDB-5lc9: Structure of Polyphosphate Kinase from Meiothermus ruber Apo-form 手法: X-RAY DIFFRACTION / 解像度: 1.903 Å PDB-5lcd: Structure of Polyphosphate Kinase from Meiothermus ruber bound to AMP 手法: X-RAY DIFFRACTION / 解像度: 2.66 Å PDB-5ld1: Crystal Structure of Polyphosphate Kinase from Meiothermus ruber bound to ATP 手法: X-RAY DIFFRACTION / 解像度: 2.09 Å PDB-5ldb: Crystal Structure of Polyphosphate Kinase from Meiothermus ruber bound to ADP 手法: X-RAY DIFFRACTION / 解像度: 2.3 Å PDB-5ll0: Structure of Polyphosphate Kinase 2 from Francisella tularensis SCHU S4 with polyphosphate 手法: X-RAY DIFFRACTION / 解像度: 1.96 Å PDB-5llb: Structure of Polyphosphate Kinase 2 from Francisella tularensis with AMPPCH2PPP and polyphosphate 手法: X-RAY DIFFRACTION / 解像度: 1.92 Å PDB-5llf: Structure of Polyphosphate Kinase 2 mutant D117N from Francisella tularensis with polyphosphate 手法: X-RAY DIFFRACTION / 解像度: 2.31 Å PDB-5maq: Crystal Structure of Polyphosphate Kinase from Meiothermus ruber bound to ADP and PPi 手法: X-RAY DIFFRACTION / 解像度: 2.46 Å PDB-5o6k: Structure of Polyphosphate Kinase from Meiothermus ruber N121D 手法: X-RAY DIFFRACTION / 解像度: 2.903 Å PDB-5o6m: Structure of Polyphosphate Kinase from Meiothermus ruber N121D bound to ATP 手法: X-RAY DIFFRACTION / 解像度: 2.3 Å |
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化合物 | ChemComp-9PI: bis[oxidanyl-[oxidanyl-[oxidanyl(phosphonooxy)phosphoryl]oxy-phosphoryl]oxy-phosphoryl] hydrogen phosphate
ChemComp-6YZ: [[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-[[oxidanyl-[oxidanyl(phosphonooxy)phosphoryl]oxy-phosphoryl]methyl]phosphinic acid
ChemComp-6YW: [oxidanyl-[oxidanyl-[oxidanyl(phosphonooxy)phosphoryl]oxy-phosphoryl]oxy-phosphoryl] phosphono hydrogen phosphate
ChemComp-6YX: [oxidanyl-[oxidanyl-[oxidanyl-[oxidanyl-[oxidanyl-[oxidanyl-[oxidanyl-[oxidanyl-[oxidanyl-[oxidanyl-[oxidanyl-[oxidanyl-[oxidanyl-[oxidanyl-[oxidanyl-[oxidanyl-[oxidanyl-[oxidanyl-[oxidanyl-[oxidanyl-[oxidanyl(phosphonooxy)phosphoryl]oxy-phosphoryl]oxy-phosphoryl]oxy-phosphoryl]oxy-phosphoryl]oxy-phosphoryl]oxy-phosphoryl]oxy-phosphoryl]oxy-phosphoryl]oxy-phosphoryl]oxy-phosphoryl]oxy-phosphoryl]oxy-phosphoryl]oxy-phosphoryl]oxy-phosphoryl]oxy-phosphoryl]oxy-phosphoryl]oxy-phosphoryl]oxy-phosphoryl]oxy-phosphoryl]oxy-phosphoryl] phosphono hydrogen phosphate
ChemComp-6YY: bis[oxidanyl-[oxidanyl-[oxidanyl-[oxidanyl(phosphonooxy)phosphoryl]oxy-phosphoryl]oxy-phosphoryl]oxy-phosphoryl] hydrogen phosphate
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由来 | - meiothermus ruber h328 (バクテリア)
- meiothermus ruber (バクテリア)
- francisella tularensis subsp. tularensis (strain schu s4 / schu 4) (バクテリア)
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キーワード | TRANSFERASE / Polyphosphate Kinase / Polyphosphate metabolism and nucleotide metabolism / Polyphosphate Kinase 2 enzyme / Complex with non-hydrolysable ATP analogue. Polyphosphate metabolism. Nucleotide metabolism / polyphosphate metabolism / nucleotide metabolism / Polyphosphate Kinase type 2 class III |
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