タイトル | RNA specificity and regulation of catalysis in the eukaryotic polynucleotide kinase clp1. |
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ジャーナル・号・ページ | Mol. Cell, Vol. 54, Page 975-986, Year 2014 |
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掲載日 | 2014年1月18日 (構造データの登録日) |
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著者 | Dikfidan, A. / Loll, B. / Zeymer, C. / Magler, I. / Clausen, T. / Meinhart, A. |
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リンク | Mol. Cell / PubMed:24813946 |
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手法 | X線回折 |
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解像度 | 1.98 - 2.6 Å |
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構造データ | PDB-4ohv: C. Elegans Clp1 bound to AMP-PNP, and Mg2+ 手法: X-RAY DIFFRACTION / 解像度: 2.3 Å PDB-4ohw: C. Elegans Clp1 bound to ATP, and Mn2+(ATP-bound state) 手法: X-RAY DIFFRACTION / 解像度: 2.3 Å PDB-4ohx: C. Elegans Clp1 bound to ADP and Mg2+ (RNA released state) 手法: X-RAY DIFFRACTION / 解像度: 1.98 Å PDB-4ohy: C. Elegans Clp1 bound to ssRNA dinucleotide GC, AMP-PNP, and Mg2+(inhibited substrate bound state) 手法: X-RAY DIFFRACTION / 解像度: 2 Å PDB-4ohz: bound to ssRNA tetranucleotide GAAA, ADP, and Mg2+ 手法: X-RAY DIFFRACTION / 解像度: 2.4 Å PDB-4oi0: bound to ssRNA dinucleotide GC, ADP, AlF4-, and Mg2+(transition state, data set I) 手法: X-RAY DIFFRACTION / 解像度: 2.2 Å PDB-4oi1: Clp1 bound to ssRNA dinucleotide GC, ADP, AlF4-, and Mg2+(transition state, data set II) 手法: X-RAY DIFFRACTION / 解像度: 2.3 Å PDB-4oi2: C. Elegans Clp1 and ADP and Mg2+ (turnover state) 手法: X-RAY DIFFRACTION / 解像度: 2.6 Å PDB-4oi4: Protein complex of Clp1 bound to ATP and Mg2+ with Pcf11deltaN454deltaC563 of S. cerevisiae 手法: X-RAY DIFFRACTION / 解像度: 2.4 Å |
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化合物 | ChemComp-ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER / AMP-PNP / AMP-PNP, エネルギー貯蔵分子類似体*YM
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由来 | - caenorhabditis elegans (センチュウ)
- saccharomyces cerevisiae (パン酵母)
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キーワード | RNA BINDING PROTEIN / polynucleotide kinase / RNA BINDING PROTEIN/RNA / RNA BINDING PROTEIN-RNA complex / TRANSCRIPTION / Clp1 / Pcf11 / cleavage factor Ia / 3'-end mRNA processing |
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