タイトル | Crystallographic Snapshots of Oxalyl-Coa Decarboxylase Give Insights Into Catalysis by Nonoxidative Thdp-Dependent Decarboxylases |
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ジャーナル・号・ページ | Structure, Vol. 15, Page 853-, Year 2007 |
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掲載日 | 2007年2月26日 (構造データの登録日) |
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著者 | Berthold, C.L. / Toyota, C.G. / Moussatche, P. / Wood, M.D. / Leeper, F. / Richards, N.G.J. / Lindqvist, Y. |
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リンク | Structure / PubMed:17637344 |
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手法 | X線回折 |
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解像度 | 1.82 - 2.2 Å |
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構造データ | PDB-2ji6: X-ray structure of Oxalyl-CoA decarboxylase in complex with 3-deaza- ThDP and oxalyl-CoA 手法: X-RAY DIFFRACTION / 解像度: 2.06 Å PDB-2ji7: X-ray structure of Oxalyl-CoA decarboxylase with covalent reaction intermediate 手法: X-RAY DIFFRACTION / 解像度: 1.82 Å PDB-2ji8: X-ray structure of Oxalyl-CoA decarboxylase in complex with Formyl- CoA 手法: X-RAY DIFFRACTION / 解像度: 2.15 Å PDB-2ji9: X-ray structure of Oxalyl-CoA decarboxylase in complex with 3-deaza- ThDP 手法: X-RAY DIFFRACTION / 解像度: 2.2 Å PDB-2jib: X-ray structure of Oxalyl-CoA decarboxylase in complex with coenzyme- A 手法: X-RAY DIFFRACTION / 解像度: 2.2 Å |
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化合物 | ChemComp-TPW: 2-{4-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-3-METHYLTHIOPHEN-2-YL}ETHYL TRIHYDROGEN DIPHOSPHATE / 3-デアザチアミン二りん酸
ChemComp-OXT: 3-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-2-{(1R,11R,15S,17R)-19-[(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-4-HYDROXY-3-(PHOSPHONOOXY)TETRAHYDROFURAN-2-YL]-1,11,15,17-TETRAHYDROXY-12,12-DIMETHYL-15,17-DIOXIDO-6,10-DIOXO-14,16,18-TRIOXA-2-THIA-5,9-DIAZA-15,17-DIPHOSPHANONADEC-1-YL}-5-(2-{[(R)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}ETHYL)-4-METHYL-1,3-THIAZOL-3-IUM
ChemComp-FYN: S-{(9R,13S,15R)-17-[(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-4-HYDROXY-3-(PHOSPHONOOXY)TETRAHYDROFURAN-2-YL]-9,13,15-TRIHYDROXY-10,10-DIMETHYL-13,15-DIOXIDO-4,8-DIOXO-12,14,16-TRIOXA-3,7-DIAZA-13,15-DIPHOSPHAHEPTADEC-1-YL} THIOFORMATE / ホルミルCoA
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由来 | - oxalobacter formigenes (バクテリア)
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キーワード | LYASE / FLAVOPROTEIN / DECARBOXYLASE / THIAMIN DIPHOSPHATE-DEPENDENT / SUBSTRATE COMPLEX / OXALATE DEGRADATION / THIAMINE PYROPHOSPHATE / NON- OXIDATIVE DECARBOXYLASE / INTERMEDIATE COMPLEX / PRODUCT COMPLEX / COFACTOR ANALOGUE INHIBITOR COMPLEX |
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