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Structure paper

TitleDNA selection by the master transcription factor PU.1.
Journal, issue, pagesCell Rep, Vol. 42, Page 112671-112671, Year 2023
Publish dateAug 17, 2022 (structure data deposition date)
AuthorsTerrell, J.R. / Taylor, S.J. / Schneider, A.L. / Lu, Y. / Vernon, T.N. / Xhani, S. / Gumpper, R.H. / Luo, M. / Wilson, W.D. / Steidl, U. / Poon, G.M.K.
External linksCell Rep / PubMed:37352101
MethodsX-ray diffraction
Resolution1.22 - 2.63 Å
Structure data

PDB-8e3k:
Human PU.1 ETS-Domain (165-270) Bound to d(AATAAGCGGAAGTGGG)
Method: X-RAY DIFFRACTION / Resolution: 1.28 Å

PDB-8e3r:
Human PU.1 ETS-Domain (165-270) Bound to d(AATAAAAGGAAGTGGG)
Method: X-RAY DIFFRACTION / Resolution: 1.45 Å

PDB-8e4h:
Human PU.1 ETS-Domain (165-270) Bound to d(AATAAGAGGAAGTGGG)
Method: X-RAY DIFFRACTION / Resolution: 1.39 Å

PDB-8e5y:
Human PU.1 ETS-Domain Bound to d(AATAAGCGGAAGTGGG) Acetate Free at pH 5.4
Method: X-RAY DIFFRACTION / Resolution: 1.32 Å

PDB-8ebh:
Human PU.1 ETS-Domain (165-270) Bound to d(AATAAGCGGAATGGGG)
Method: X-RAY DIFFRACTION / Resolution: 1.33 Å

PDB-8ee9:
Human PU.1 ETS-Domain (165-270) Bound to d(AATAAAAGGAATGGGG)
Method: X-RAY DIFFRACTION / Resolution: 1.22 Å

PDB-8ej6:
Human PU.1 ETS-Domain (165-270) Bound to d(AATAAGAGGAATGGGG)
Method: X-RAY DIFFRACTION / Resolution: 1.39 Å

PDB-8ej8:
Human PU.1 ETS-Domain (165-270) Q226E Mutant Bound to d(AATAAAAGGAAGTGGG)
Method: X-RAY DIFFRACTION / Resolution: 1.45 Å

PDB-8ek3:
Human PU.1 ETS-Domain (165-270) Q226E Mutant Bound to d(AATAAGCGGAATGGGG)
Method: X-RAY DIFFRACTION / Resolution: 1.38 Å

PDB-8ek8:
Human PU.1 ETS-Domain (165-270) Bound to d(AATAAAAGGAGAAGGG)
Method: X-RAY DIFFRACTION / Resolution: 2.63 Å

PDB-8ekj:
Human PU.1 ETS-Domain (165-270) Bound to d(AATAAATGGAAGTGGG)
Method: X-RAY DIFFRACTION / Resolution: 1.54 Å

PDB-8eku:
Human PU.1 ETS-Domain (165-270) Bound to d(AATAAATGGAATGGGG)
Method: X-RAY DIFFRACTION / Resolution: 1.52 Å

PDB-8ekv:
Human PU.1 ETS-Domain (165-270) Bound to d(AATAAGCGGATGTGGG)
Method: X-RAY DIFFRACTION / Resolution: 1.62 Å

PDB-8ekz:
Human PU.1 ETS-Domain (165-270) Bound to d(AATAAGGAGAAGTAGG)
Method: X-RAY DIFFRACTION / Resolution: 1.42 Å

PDB-8em9:
Human PU.1 ETS-Domain (165-270) Bound to d(AATAGGAGAAGTAGGG)
Method: X-RAY DIFFRACTION / Resolution: 2.341 Å

PDB-8emd:
Human PU.1 ETS-Domain (165-270) Q226E Mutant Bound to d(AATAAGCGGAAGTGGG)
Method: X-RAY DIFFRACTION / Resolution: 1.55 Å

PDB-8eng:
Human PU.1 ETS-Domain (165-270) Bound to d(AATAAGCGGAAGTGGG) with Hemi-methylated CpG (forward strand)
Method: X-RAY DIFFRACTION / Resolution: 1.25 Å

PDB-8eo1:
Human PU.1 ETS-Domain (165-270) Bound to d(AATAAGCGGAAGTGGG) with Hemi-methylated CpG (reverse strand)
Method: X-RAY DIFFRACTION / Resolution: 1.28 Å

PDB-8eo4:
Human PU.1 ETS-Domain (165-270) Bound to d(AATAAGCGGAAGTGGG) with Di-methylated CpG sites
Method: X-RAY DIFFRACTION / Resolution: 1.24 Å

PDB-8eqg:
Human PU.1 ETS-Domain (165-270) Bound to d(AATAAA(DU)GGAAGTGGG)
Method: X-RAY DIFFRACTION / Resolution: 1.39 Å

PDB-8eqk:
Human PU.1 ETS-Domain (165-270) Bound to d(AATAACCGGAAGTGGG)
Method: X-RAY DIFFRACTION / Resolution: 1.45 Å

PDB-8eql:
Human PU.1 ETS-Domain (165-270) Q226E Mutant Bound to d(AATAACCGGAAGTGGG)
Method: X-RAY DIFFRACTION / Resolution: 1.52 Å

Chemicals

ChemComp-NA:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-GOL:
GLYCEROL

Source
  • homo sapiens (human)
  • synthetic construct (others)
  • dna molecule (others)
KeywordsTRANSCRIPTION/DNA / transcription factor / protein-DNA complex / ETS family / ETS / PU.1 / TRANSCRIPTION-DNA complex

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