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Structure paper

TitleA three-dimensional movie of structural changes in bacteriorhodopsin
Journal, issue, pagesScience, Vol. 354, Page 1552-1557, Year 2016
Publish dateJun 2, 2016 (structure data deposition date)
AuthorsNango, E. / Royant, A. / Kubo, M. / Nakane, T. / Wickstrand, C. / Kimura, T. / Tanaka, T. / Tono, K. / Song, C. / Tanaka, R. ...Nango, E. / Royant, A. / Kubo, M. / Nakane, T. / Wickstrand, C. / Kimura, T. / Tanaka, T. / Tono, K. / Song, C. / Tanaka, R. / Arima, T. / Yamashita, A. / Kobayashi, J. / Hosaka, T. / Mizohata, E. / Nogly, P. / Sugahara, M. / Nam, D. / Nomura, T. / Shimamura, T. / Im, D. / Fujiwara, T. / Yamanaka, Y. / Jeon, B. / Nishizawa, T. / Oda, K. / Fukuda, M. / Andersson, R. / Bath, P. / Dods, R. / Davidsson, J. / Matsuoka, S. / Kawatake, S. / Murata, M. / Nureki, O. / Owada, S. / Kameshima, T. / Hatsui, T. / Joti, Y. / Schertler, G. / Yabashi, M. / Bondar, A.N. / Standfuss, J. / Neutze, R. / Iwata, S.
External linksScience / PubMed:28008064
MethodsX-ray diffraction
Resolution2 - 2.1 Å
Structure data

PDB-5b6v:
A three dimensional movie of structural changes in bacteriorhodopsin: resting state structure
Method: X-RAY DIFFRACTION / Resolution: 2 Å

PDB-5b6w:
A three dimensional movie of structural changes in bacteriorhodopsin: structure obtained 16 ns after photoexcitation
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-5b6x:
A three dimensional movie of structural changes in bacteriorhodopsin: structure obtained 760 ns after photoexcitation
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-5b6y:
A three dimensional movie of structural changes in bacteriorhodopsin: structure obtained 36.2 us after photoexcitation
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-5b6z:
A three dimensional movie of structural changes in bacteriorhodopsin: structure obtained 1.725 ms us after photoexcitation
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-5h2h:
A three dimensional movie of structural changes in bacteriorhodopsin: structure obtained 40 ns after photoexcitation
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-5h2i:
A three dimensional movie of structural changes in bacteriorhodopsin: structure obtained 110 ns after photoexcitation
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-5h2j:
A three dimensional movie of structural changes in bacteriorhodopsin: structure obtained 290 ns after photoexcitation
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-5h2k:
A three dimensional movie of structural changes in bacteriorhodopsin: structure obtained 2 us after photoexcitation
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-5h2l:
A three dimensional movie of structural changes in bacteriorhodopsin: structure obtained 5.25 us after photoexcitation
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-5h2m:
A three dimensional movie of structural changes in bacteriorhodopsin: structure obtained 13.8 us after photoexcitation
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-5h2n:
A three dimensional movie of structural changes in bacteriorhodopsin: structure obtained 95.2 us after photoexcitation
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-5h2o:
A three dimensional movie of structural changes in bacteriorhodopsin: structure obtained 250 us after photoexcitation
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-5h2p:
A three dimensional movie of structural changes in bacteriorhodopsin: structure obtained 657 us after photoexcitation
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

Chemicals

ChemComp-RET:
RETINAL

ChemComp-L2P:
2,3-DI-PHYTANYL-GLYCEROL

ChemComp-TRD:
TRIDECANE

ChemComp-D10:
DECANE

ChemComp-HP6:
HEPTANE

ChemComp-OCT:
N-OCTANE

ChemComp-MYS:
PENTADECANE

ChemComp-UND:
UNDECANE

ChemComp-DD9:
nonane

ChemComp-C14:
TETRADECANE

ChemComp-HOH:
WATER

Source
  • halobacterium salinarum (strain atcc 700922 / jcm 11081 / nrc-1) (Halophile)
  • halobacterium salinarum nrc-1 (Halophile)
KeywordsPROTON TRANSPORT / bacteriorhodopsin / XFEL / time-resolved SFX / SACLA / time-resolved serial femtosecond crystallography / time- resolved serial femtosecond crystallography

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