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Structure paper

TitleA Selective Jumonji H3K27 Demethylase Inhibitor Modulates the Proinflammatory Macrophage Response
Journal, issue, pagesNature, Vol. 488, Page 404-, Year 2012
Publish dateOct 19, 2010 (structure data deposition date)
AuthorsKruidenier, L. / Chung, C. / Cheng, Z. / Liddle, J. / Che, K. / Joberty, G. / Bantscheff, M. / Bountra, C. / Bridges, A. / Diallo, H. ...Kruidenier, L. / Chung, C. / Cheng, Z. / Liddle, J. / Che, K. / Joberty, G. / Bantscheff, M. / Bountra, C. / Bridges, A. / Diallo, H. / Eberhard, D. / Hutchinson, S. / Jones, E. / Katso, R. / Leveridge, M. / Mander, P.K. / Mosley, J. / Ramirez-Molina, C. / Rowland, P. / Schofield, C.J. / Sheppard, R.J. / Smith, J.E. / Swales, C. / Tanner, R. / Thomas, P. / Tumber, A. / Drewes, G. / Oppermann, U. / Patel, D.J. / Lee, K. / Wilson, D.M.
External linksNature / PubMed:22842901
MethodsX-ray diffraction
Resolution1.86 - 2.99 Å
Structure data

PDB-2xue:
CRYSTAL STRUCTURE OF JMJD3
Method: X-RAY DIFFRACTION / Resolution: 2 Å

PDB-4ask:
CRYSTAL STRUCTURE OF JMJD3 WITH GSK-J1
Method: X-RAY DIFFRACTION / Resolution: 1.86 Å

PDB-4eyu:
The free structure of the mouse C-terminal domain of KDM6B
Method: X-RAY DIFFRACTION / Resolution: 2.3 Å

PDB-4ez4:
free KDM6B structure
Method: X-RAY DIFFRACTION / Resolution: 2.99 Å

PDB-4ezh:
the crystal structure of KDM6B bound with H3K27me3 peptide
Method: X-RAY DIFFRACTION / Resolution: 2.52 Å

Chemicals

ChemComp-ZN:
Unknown entry

ChemComp-SO4:
SULFATE ION

ChemComp-FE:
Unknown entry

ChemComp-AKG:
2-OXOGLUTARIC ACID

ChemComp-HOH:
WATER

ChemComp-K0I:
3-[[2-pyridin-2-yl-6-(1,2,4,5-tetrahydro-3-benzazepin-3-yl)pyrimidin-4-yl]amino]propanoic acid

ChemComp-CO:
Unknown entry

ChemComp-OGA:
N-OXALYLGLYCINE

ChemComp-NI:
NICKEL (II) ION

Source
  • homo sapiens (human)
  • mus musculus (house mouse)
  • synthetic construct (others)
KeywordsOXIDOREDUCTASE / HISTONE METHYLASE / KDM6B / GSK-J1 / INHIBITOR / LYSINE SPECIFIC HISTONE DEMETHYLASE / JMJC domain / Histone K27 trimethyl and dimethyl demethylase / mjd3/KDM6B / histone demethylase / JmjC / histone K27me3/me2 'eraser'

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