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Structure paper

TitleStructural insights into nucleophile substrate specificity in variants of N-Serine hydroxymethyltransferase from Streptococcus thermophilus
Journal, issue, pagesTo Be Published
Publish dateNov 15, 2019 (structure data deposition date)
AuthorsPetrillo, G. / Hernandez, K. / Bujons, J. / Clapes, P. / Uson, I.
External linksSearch PubMed
MethodsX-ray diffraction
Resolution1.96 - 2.5 Å
Structure data

PDB-6tgh:
SHMT from Streptococcus thermophilus Tyr55Thr variant in complex with D-Serine both as external aldimine and as non-covalent complex
Method: X-RAY DIFFRACTION / Resolution: 2.12 Å

PDB-6ti1:
SHMT from Streptococcus thermophilus Tyr55Ser variant in complex with PLP/L-Threonine/Lys230 gem diamine complex
Method: X-RAY DIFFRACTION / Resolution: 2 Å

PDB-6ti3:
Apo-SHMT from Streptococcus thermophilus Tyr55Ser variant in complex with D-Threonine
Method: X-RAY DIFFRACTION / Resolution: 1.96 Å

PDB-6yrw:
SHMT from Streptococcus thermophilus Tyr55Ser variant as internal aldimine and as non-covalent complex with D-Ser
Method: X-RAY DIFFRACTION / Resolution: 2.5 Å

Chemicals

ChemComp-NA:
Unknown entry

ChemComp-EVM:
L-Serine, N-[[3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]-4-pyridinyl]methylene]

ChemComp-DSN:
D-SERINE

ChemComp-PLP:
PYRIDOXAL-5'-PHOSPHATE

ChemComp-HOH:
WATER

ChemComp-GOL:
GLYCEROL

ChemComp-2BO:
N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)-L-threonine

ChemComp-DTH:
D-THREONINE

Source
  • streptococcus thermophilus (bacteria)
KeywordsTRANSFERASE / Pyridoxal phosphate; X-ray crystallography; hydroxymethyltransferase; proton abstraction; tetrahydrofolate-independent

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