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Structure paper

TitleStructural Basis for Base Engagement and Stereochemistry Revealed by Alteration of Catalytic Residue Glu43 in DNA Repair Glycosylase MutY
Journal, issue, pagesTo Be Published
Publish dateAug 1, 2022 (structure data deposition date)
AuthorsRusselburg, L.P. / Demir, M. / Cedeno, K. / David, S.S. / Horvath, M.P.
External linksSearch PubMed
MethodsX-ray diffraction
Resolution1.68 - 2.6 Å
Structure data

PDB-8dwd:
Adenine glycosylase MutY variant E43S in complex with DNA containing d(8-oxo-G) paired with an AP site generated by the enzyme acting on purine
Method: X-RAY DIFFRACTION / Resolution: 1.68 Å

PDB-8dwe:
Adenine glycosylase MutY variant E43Q in complex with DNA containing d(8-oxo-G) paired with substrate purine
Method: X-RAY DIFFRACTION / Resolution: 2.2 Å

PDB-8dwf:
Glycosylase MutY variant E43S in complex with DNA containing d(8-oxo-G) paired with substrate adenine
Method: X-RAY DIFFRACTION / Resolution: 2.6 Å

Chemicals

ChemComp-SF4:
IRON/SULFUR CLUSTER

ChemComp-ACT:
ACETATE ION

ChemComp-CA:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-TRS:
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL / pH buffer*YM

Source
  • geobacillus stearothermophilus (bacteria)
  • synthetic construct (others)
KeywordsHYDROLASE/DNA / Protein-DNA complex / DNA repair / Base Excision Repair / Apurinic/Apyrimidinic / HYDROLASE / HYDROLASE-DNA complex

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