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Structure paper

TitleCrystal structures of Aspergillus oryzae Rib2 deaminase: the functional mechanism involved in riboflavin biosynthesis.
Journal, issue, pagesIucrj, Vol. 8, Page 549-558, Year 2021
Publish dateDec 30, 2020 (structure data deposition date)
AuthorsChen, S.C. / Ye, L.C. / Yen, T.M. / Zhu, R.X. / Li, C.Y. / Chang, S.C. / Liaw, S.H. / Hsu, C.H.
External linksIucrj / Search PubMed
MethodsX-ray diffraction
Resolution1.44 - 1.7 Å
Structure data

PDB-7dry:
Crystal structure of Aspergillus oryzae Rib2 deaminase
Method: X-RAY DIFFRACTION / Resolution: 1.44 Å

PDB-7drz:
Crystal structure of Aspergillus oryzae Rib2 deaminase (C-terminal deletion mutant) at pH 4.6
Method: X-RAY DIFFRACTION / Resolution: 1.7 Å

PDB-7ds0:
Crystal structure of Aspergillus oryzae Rib2 deaminase (C-terminal deletion mutant) at pH 6.5
Method: X-RAY DIFFRACTION / Resolution: 1.69 Å

PDB-7ds1:
Crystal structure of Aspergillus oryzae Rib2 deaminase in complex with DARIPP (C-terminal deletion mutant at pH 6.5)
Method: X-RAY DIFFRACTION / Resolution: 1.58 Å

Chemicals

ChemComp-ZN:
Unknown entry

ChemComp-SO4:
SULFATE ION

ChemComp-HOH:
WATER

ChemComp-HJL:
[(2~{R},3~{S},4~{S})-5-[[2,5-bis(azanyl)-6-oxidanylidene-1~{H}-pyrimidin-4-yl]amino]-2,3,4-tris(oxidanyl)pentyl] dihydrogen phosphate

Source
  • aspergillus oryzae rib40 (mold)
KeywordsBIOSYNTHETIC PROTEIN / deaminase / CDA fold / riboflavin

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