Database of articles cited by EMDB/PDB/SASBDB data

Keywords
Structure methods	All X-ray diffraction NMR electron microscopy small angle scattering neutron diffraction fiber diffraction powder diffraction infrared spectroscopy EPR fluorescence transfer theoretical model Hybrid
Author
Journal
IF	>30 >20 >10 >5 all

Title	The Herpes simplex Origin Binding Protein: Mechanisms for sequence specific DNA binding and dimerization revealed by Cryo-EM
Journal, issue, pages	Nucleic Acids Res., Year 2025
Publish date	Nov 19, 2024 (structure data deposition date)
Authors	Gustavsson E / Grunewald K / Elias P / Hallberg BM
External links	Nucleic Acids Res. / Search PubMed
Methods	EM (single particle)
Resolution	2.74 - 4.38 Å
Structure data	52135 9hgi EMDB-52135, PDB-9hgi: HSV-1 Origin Binding Protein in complex with double-stranded DNA recognition sequence OriS with 6 basepairs removed from the AT-rich region Method: EM (single particle) / Resolution: 2.77 Å EMDB-52136: Focused map of HSV-1 Origin Binding Protein monomer A in complex with double-stranded DNA recognition sequence OriS with 6 basepairs removed from the AT-rich region Method: EM (single particle) / Resolution: 2.76 Å EMDB-52137: Focused map of HSV-1 Origin Binding Protein monomer B in complex with double-stranded DNA recognition sequence OriS with 6 basepairs removed from the AT-rich region Method: EM (single particle) / Resolution: 2.74 Å 52145 9hgj EMDB-52145, PDB-9hgj: HSV-1 Origin Binding Protein in complex with double-stranded DNA recognition sequence OriS and non-hydrolyzable ATP analog Method: EM (single particle) / Resolution: 3.53 Å EMDB-52146: Composite map of HSV-1 Origin Binding Protein tetramer in complex with single-stranded DNA recognition sites Box 1 and Box 3 with 10 dT-tail Method: EM (single particle) / Resolution: 4.34 Å EMDB-52147: Consensus map of HSV-1 Origin Binding Protein tetramer in complex with single-stranded DNA recognition sites Box 1 and Box 3 with 10 dT-tail Method: EM (single particle) / Resolution: 4.34 Å EMDB-52148: Focused map of dimer 1 in HSV-1 Origin Binding Protein tetramer in complex with single-stranded DNA recognition sites Box 1 and Box 3 with 10 dT-tail Method: EM (single particle) / Resolution: 4.38 Å EMDB-52149: Focused map of dimer 2 of HSV-1 Origin Binding Protein tetramer in complex with single-stranded DNA recognition sites Box 1 and Box 3 with 10 dT-tail Method: EM (single particle) / Resolution: 4.17 Å EMDB-52150: HSV-1 Origin Binding Protein monomer in complex with hairpin DNA OriS recognition sites Box 1 and Box 3 with 10 dT-tail Method: EM (single particle) / Resolution: 2.9 Å
Chemicals	ChemComp-AGS: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER / ATP-gamma-S, energy-carrying molecule analogueYM ChemComp-MG*: Unknown entry
Source	human alphaherpesvirus 1 strain kos synthetic construct (others)
Keywords	DNA BINDING PROTEIN / DNA / Helicase / Complex