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Structure paper

TitleCrystal structures of human immune protein FIBCD1 suggest an extended binding site compatible with recognition of pathogen associated carbohydrate motifs
Journal, issue, pagesJ. Biol. Chem., Year 2023
Publish dateJul 10, 2020 (structure data deposition date)
AuthorsWilliams, H.M. / Moeller, J.B. / Burns, I. / Schlosser, A. / Sorensen, G.L. / Greenhough, T.J. / Holmskov, U. / Shrive, A.K.
External linksJ. Biol. Chem. / Search PubMed
MethodsX-ray diffraction
Resolution1.84 - 2 Å
Structure data

PDB-6zqr:
Crystal structure of tetrameric fibrinogen-like recognition domain of FIBCD1 with GlcNAc ligand bound
Method: X-RAY DIFFRACTION / Resolution: 1.93 Å

PDB-6zqx:
Crystal structure of tetrameric fibrinogen-like recognition domain of FIBCD1 with N,N'-diacetyl chitobiose ligand bound
Method: X-RAY DIFFRACTION / Resolution: 1.84 Å

PDB-6zqy:
Crystal structure of tetrameric fibrinogen-like recognition domain of FIBCD1 with Neu5Ac ligand bound
Method: X-RAY DIFFRACTION / Resolution: 1.85 Å

PDB-6zr0:
Crystal structure of tetrameric fibrinogen-like recognition domain of FIBCD1 with N-acetylalanine ligand bound
Method: X-RAY DIFFRACTION / Resolution: 1.94 Å

PDB-6zr3:
Crystal structure of tetrameric fibrinogen-like recognition domain of FIBCD1 with N-acetyl-galactosamine-4-sulfate ligand bound
Method: X-RAY DIFFRACTION / Resolution: 1.97 Å

PDB-6zr4:
Crystal structure of tetrameric fibrinogen-like recognition domain of FIBCD1
Method: X-RAY DIFFRACTION / Resolution: 2.0 Å

Chemicals

ChemComp-CA:
Unknown entry

ChemComp-SO4:
SULFATE ION / Sulfate

ChemComp-ACY:
ACETIC ACID / Acetic acid

ChemComp-NAG:
2-acetamido-2-deoxy-beta-D-glucopyranose / N-Acetylglucosamine

ChemComp-HOH:
WATER / Water

ChemComp-GOL:
GLYCEROL / Glycerol

ChemComp-SLB:
N-acetyl-beta-neuraminic acid / N-Acetylneuraminic acid

ChemComp-AYA:
N-ACETYLALANINE

ChemComp-ASG:
2-acetamido-2-deoxy-4-O-sulfo-beta-D-galactopyranose

Source
  • homo sapiens (human)
KeywordsSUGAR BINDING PROTEIN / fibrinogen-like domain / N-acetyl-binding protein

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