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TitleX-ray structures of uridine phosphorylase from Vibrio cholerae in complexes with uridine, thymidine, uracil, thymine, and phosphate anion: Substrate specificity of bacterial uridine phosphorylases
Journal, issue, pagesCrystallography Reports, Vol. 61, Page 954-973, Year 2016
Publish dateJan 9, 2013 (structure data deposition date)
AuthorsProkofev, I.I. / Lashkov, A.A. / Gabdoulkhakov, A.G. / Balaev, V.V. / Seregina, T.A. / Mironov, A.S. / Betzel, C. / Mikhailov, A.M.
External linksCrystallography Reports / Search PubMed
MethodsX-ray diffraction
Resolution1.29 - 2.243 Å
Structure data

PDB-4ip0:
X-Ray Structure of the Complex Uridine Phosphorylase from Vibrio cholerae with Phosphate Ion at 1.29 A Resolution
Method: X-RAY DIFFRACTION / Resolution: 1.294 Å

PDB-4lzw:
X-ray structure uridine phosphorylase from Vibrio cholerae in complex with thymidine at 1.29 A resolution
Method: X-RAY DIFFRACTION / Resolution: 1.29 Å

PDB-5c80:
X-ray structure uridine phosphorylase from Vibrio cholerae in complex with uridine at 2.24 A resolution
Method: X-RAY DIFFRACTION / Resolution: 2.243 Å

Chemicals

ChemComp-NA:
Unknown entry

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-PO4:
PHOSPHATE ION

ChemComp-SO4:
SULFATE ION

ChemComp-EOH:
ETHANOL

ChemComp-CL:
Unknown entry

ChemComp-K:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-THM:
THYMIDINE

ChemComp-MG:
Unknown entry

ChemComp-URI:
URIDINE

ChemComp-TRS:
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL / pH buffer*YM

ChemComp-PEG:
DI(HYDROXYETHYL)ETHER

ChemComp-GOL:
GLYCEROL

Source
  • vibrio cholerae (bacteria)
KeywordsTRANSFERASE / ROSSMANN FOLD / PHOSPHORYLATION / NUCLEOSIDE / cytoplasmic

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