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TitleDissection of the substrate preference and structure of gut microbial-glucuronidases identifies the major bacteria causing xenobiotic toxicity
Journal, issue, pagesTo Be Published
Publish dateDec 25, 2017 (structure data deposition date)
AuthorsDashnyam, P. / Mudududdla, R. / Hsieh, T.J. / Lin, T.C. / Lin, H.Y. / Chen, P.Y. / Hsu, C.Y. / Lin, C.H.
External linksSearch PubMed
MethodsX-ray diffraction
Resolution1.45 - 1.859 Å
Structure data

PDB-5z1a:
The crystal structure of Bacteroides fragilis beta-glucuronidase in complex with uronic isofagomine
Method: X-RAY DIFFRACTION / Resolution: 1.859 Å

PDB-5z1b:
Structure of Bifidobacterium dentium beta-glucuronidase complexed with coumarin-3-O-glucuronide
Method: X-RAY DIFFRACTION / Resolution: 1.45 Å

Chemicals

ChemComp-SJ5:
(3S,4R,5R)-4,5-dihydroxypiperidine-3-carboxylic acid

ChemComp-HOH:
WATER

ChemComp-BDP:
beta-D-glucopyranuronic acid

ChemComp-SE2:
3-HYDROXY-2H-CHROMEN-2-ONE

Source
  • bacteroides fragilis nctc 9343 (bacteria)
  • bifidobacterium dentium atcc 27679 (bacteria)
KeywordsHYDROLASE / beta-glucuronidase / GH2

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