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TitleStructural basis for uracil removal from DNA by human SMUG1.
Journal, issue, pagesNat Commun, Vol. 17, Year 2026
Publish dateAug 14, 2024 (structure data deposition date)
AuthorsLudascher, J.M. / Scaletti Hutchinson, E. / Vila-Julia, G. / Jemth, A.S. / Shahid, S. / Wiita, E. / Cabeza de Vaca, I. / Pach, S. / Gajdos, L. / Aggarwal, S. ...Ludascher, J.M. / Scaletti Hutchinson, E. / Vila-Julia, G. / Jemth, A.S. / Shahid, S. / Wiita, E. / Cabeza de Vaca, I. / Pach, S. / Gajdos, L. / Aggarwal, S. / Walse, E. / Mortusewicz, O. / Helleday, T. / Carlsson, J. / Stenmark, P.
External linksNat Commun / PubMed:42230560
MethodsX-ray diffraction / neutron diffraction
Resolution0.95 - 2.1 Å
Structure data

PDB-9ggs:
Human SMUG1
Method: X-RAY DIFFRACTION / Resolution: 1.38 Å

PDB-9gk0:
Human SMUG1 in complex with uracil
Method: X-RAY DIFFRACTION / Resolution: 0.95 Å

PDB-9gm2:
Human SMUG1 in complex with DNA
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-9rqp:
Human SMUG1 in complex with 5-fluorouracil
Method: X-RAY DIFFRACTION / Resolution: 1.899 Å

PDB-9rqs:
Human APE1 in complex with DNA
Method: X-RAY DIFFRACTION / Resolution: 1.7 Å

PDB-9sq2:
H/D exchanged human SMUG1 in complex with deuterated uracil
Method: X-RAY DIFFRACTION / NEUTRON DIFFRACTION / Resolution: 1.54 Å

Chemicals

ChemComp-BCN:
BICINE / pH buffer*YM

ChemComp-PEG:
DI(HYDROXYETHYL)ETHER

ChemComp-HOH:
WATER

ChemComp-URA:
URACIL

ChemComp-DMS:
DIMETHYL SULFOXIDE / DMSO, precipitant*YM

ChemComp-URF:
5-FLUOROURACIL / medication, chemotherapy*YM

ChemComp-PGR:
R-1,2-PROPANEDIOL

Source
  • homo sapiens (human)
  • synthetic construct (others)
KeywordsHYDROLASE / SMUG1 / DNA glycosylase / uracil / AP site / DNA / 5-fluorouracil / 5-fU / APE1 / H/D exchange / X/N joint refinement / deuterated uracil

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