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TitleDynamic TOM-TIM23 supercomplex directs mitochondrial protein translocation and sorting.
Journal, issue, pagesNat Struct Mol Biol, Vol. 32, Issue 11, Page 2231-2241, Year 2025
Publish dateAug 28, 2025
AuthorsYuqi Yang / Shanshan Wang / Guopeng Wang / Yuke Lian / Lingfeng Xue / Wenhong Jiang / Qiang Guo / Chen Song / Long Li /
PubMed AbstractThe mitochondrial translocase of the outer membrane (TOM) and translocase of the inner membrane 23 (TIM23) complexes are coupled to control protein import across the outer and inner membranes, ...The mitochondrial translocase of the outer membrane (TOM) and translocase of the inner membrane 23 (TIM23) complexes are coupled to control protein import across the outer and inner membranes, respectively. However, the mechanisms of protein recognition and sorting in the TOM-TIM23 pathway remain unclear. Here we report cryo-electron microscopy structures of a translocating polypeptide substrate captured in the active TOM-TIM23 supercomplex from Saccharomyces cerevisiae. In the TOM complex, the polypeptide substrate adopts multiple conformations stabilized by hydrophilic residues from distinct regions of the Tom40 channel. In the TIM23 complex, the Tim17 and Mgr2 subunits create the translocation pathway, with a central restriction formed by four highly conserved hydrophobic residues. The substrate primarily interacts with hydrophobic residues along the Tim17-Mgr2 pathway. Substrate hydrophobicity modulates the association of Mgr2 with Tim17, enabling dynamic regulation of protein sorting toward either the matrix or membrane. These findings reveal a sophisticated translocation mechanism of the TOM-TIM23 supercomplex that ensures the efficient import of diverse mitochondrial proteins.
External linksNat Struct Mol Biol / PubMed:40877479
MethodsEM (single particle)
Resolution2.94 - 3.83 Å
Structure data

EMDB-61256, PDB-9j99:
Substrate-engaged TOM complex from yeast
Method: EM (single particle) / Resolution: 2.94 Å

EMDB-61257, PDB-9j9b:
Substrate-engaged TIM23 complex from yeast
Method: EM (single particle) / Resolution: 3.83 Å

Chemicals

ChemComp-UND:
UNDECANE

ChemComp-PC1:
1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE / phospholipid*YM

ChemComp-CDL:
CARDIOLIPIN / phospholipid*YM

Source
  • saccharomyces cerevisiae s288c (yeast)
  • Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (yeast)
  • synthetic construct (others)
KeywordsPROTEIN TRANSPORT / Mitochondrial protein import / TOM / protein translocation / TOM / TIM23 protein translocation

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