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Structure paper

TitleFragment-Based Drug Discovery of Novel High-affinity, Selective, and Anti-inflammatory Inhibitors of the Keap1-Nrf2 Protein-Protein Interaction.
Journal, issue, pagesAngew. Chem. Int. Ed. Engl., Vol. 64, Page e202508121-e202508121, Year 2025
Publish dateJan 6, 2025 (structure data deposition date)
AuthorsLin, C. / Narayanan, D. / Barreca, M. / Poulsen, C. / da Costa, L.S. / Chen, X. / Wichman, K.G. / Charley, C.A. / Lindsay, J.L. / Dezfouli, M. ...Lin, C. / Narayanan, D. / Barreca, M. / Poulsen, C. / da Costa, L.S. / Chen, X. / Wichman, K.G. / Charley, C.A. / Lindsay, J.L. / Dezfouli, M. / Vlissari, D. / Mortensen, T.S. / Chan, C.B. / Wang, J. / Richardson, W. / Manning, C.E. / Chen, Z. / Zang, J. / Kack, H. / Gajhede, M. / Bullock, A.N. / Blake, D.J. / Olagnier, D. / Bach, A.
External linksAngew. Chem. Int. Ed. Engl. / PubMed:40838516
MethodsX-ray diffraction
Resolution1.14 - 1.74 Å
Structure data

PDB-9hwq:
Crystal structure of the Keap1 Kelch domain in complex with the XChem fragment Z19735904 at 1.14 Angstrom resolution.
Method: X-RAY DIFFRACTION / Resolution: 1.14 Å

PDB-9hwr:
Crystal structure of the Keap1 Kelch domain in complex with the small molecule UCAB#827 at 1.40 Angstrom resolution
Method: X-RAY DIFFRACTION / Resolution: 1.4 Å

PDB-9hws:
Crystal structure of the Keap1 Kelch domain in complex with the small molecule UCAB#909 at 1.61 Angstrom resolution
Method: X-RAY DIFFRACTION / Resolution: 1.61 Å

PDB-9hwt:
Crystal structure of the Keap1 Kelch domain in complex with the small molecule UCAB#985 at 1.65 Angstrom resolution
Method: X-RAY DIFFRACTION / Resolution: 1.65 Å

PDB-9hwu:
Crystal structure of the Keap1 Kelch domain in complex with the small molecule UCAB#1004 at 1.40 Angstrom resolution
Method: X-RAY DIFFRACTION / Resolution: 1.4 Å

PDB-9hwv:
Crystal structure of the Keap1 Kelch domain in complex with the small molecule UCAB#1010 at 1.50 Angstrom resolution
Method: X-RAY DIFFRACTION / Resolution: 1.5 Å

PDB-9hww:
Crystal structure of the Keap1 Kelch domain in complex with the small molecule UCAB#1032 at 1.61 Angstrom resolution
Method: X-RAY DIFFRACTION / Resolution: 1.61 Å

PDB-9hwx:
Crystal structure of the Keap1 Kelch domain in complex with the small molecule UCAB#1090 at 1.74 Angstrom resolution
Method: X-RAY DIFFRACTION / Resolution: 1.74 Å

Chemicals

ChemComp-B0A:
~{N}-cyclohexyl-2-phenoxy-ethanamide

ChemComp-SO4:
SULFATE ION

ChemComp-DMS:
DIMETHYL SULFOXIDE / DMSO, precipitant*YM

ChemComp-HOH:
WATER

PDB-1ix2:
Crystal Structure of Selenomethionine PcoC, a Copper Resistance Protein from Escherichia coli

ChemComp-CL:
Unknown entry

PDB-1ix3:
Crystal Structure of Rat Heme Oxygenase-1 in complex with Heme bound to Cyanide

PDB-1ix4:
Crystal Structure of Rat Heme Oxygenase-1 in complex with Heme bound to Carbon Monoxide

PDB-1ixy:
Ternary complex of T4 phage BGT with UDP and a 13 mer DNA duplex

PDB-1ixz:
Crystal structure of the FtsH ATPase domain from Thermus thermophilus

PDB-1ix0:
I59A-3SS human lysozyme

PDB-1ix1:
Crystal Structure of P.aeruginosa Peptide deformylase Complexed with Antibiotic Actinonin

Source
  • mus musculus (house mouse)
KeywordsPEPTIDE BINDING PROTEIN / Keap1 / Nrf2 / Oxidative stress / Inhibitor

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