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Structure paper

TitleObservation of early events in the photoactivation of Myxobacterial phytochrome using time-resolved serial femtosecond crystallography.
Journal, issue, pagesCommun Chem, Vol. 8, Page 183-183, Year 2025
Publish dateOct 15, 2024 (structure data deposition date)
AuthorsMalla, T.N. / Aldama, L. / Leon, V. / Feliz, D. / Hu, H. / Thomas, I. / Cellini, A. / Wahlgren, W.Y. / Nimmrich, A. / Botha, S. ...Malla, T.N. / Aldama, L. / Leon, V. / Feliz, D. / Hu, H. / Thomas, I. / Cellini, A. / Wahlgren, W.Y. / Nimmrich, A. / Botha, S. / Sierra, R. / Hunter, M.S. / Poitevin, F. / Lisova, S. / Batyuk, A. / Gate, G. / Jernigan, R. / Kupitz, C.J. / Maj, P. / Meszaros, P. / Kurttila, M. / Monrroy, L. / Luo, F. / Owada, S. / Kang, J. / Slavov, C. / Maj, M. / Gautier, C. / Kashipathy, M. / Tolstikova, A. / Mariani, V. / Barty, A. / Moss, F. / Schwander, P. / Liu, H. / Boutet, S. / Fromme, P. / Takala, H. / Ihalainen, J.A. / Weierstall, U. / Westenhoff, S. / Stojkovic, E.A. / Schmidt, M.
External linksCommun Chem / PubMed:40506475
MethodsX-ray diffraction
Resolution1.4 - 2.3 Å
Structure data

PDB-9dz3:
Photoactivation in Bacteriophytochromes, reference (dark) structure for the 3 ps time point
Method: X-RAY DIFFRACTION / Resolution: 2.3 Å

PDB-9dza:
Photoactivation in Bacteriophytochrome, high resolution cryo structure in the dark.
Method: X-RAY DIFFRACTION / Resolution: 1.4 Å

PDB-9dzp:
Photoactivation in Bacteriophytochromes, reference (dark) structure for the 100 ps time point
Method: X-RAY DIFFRACTION / Resolution: 1.93 Å

PDB-9md9:
Photoactivation in Bacteriophytochromes; 3ps TR-SFX structure
Method: X-RAY DIFFRACTION / Resolution: 2.3 Å

PDB-9meb:
Photoactivation in Bacteriophytochrome, 100 ps structure
Method: X-RAY DIFFRACTION / Resolution: 2.3 Å

Chemicals

ChemComp-3Q8:
3-[2-[[5-[[(3E,4S)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrol-2-yl]methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1H-pyrrol-2-yl]methyl]-5-[(4-ethyl-3-methyl-5-oxidanylidene-pyrrol-2-yl)methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid

ChemComp-BEN:
BENZAMIDINE

ChemComp-HOH:
WATER

ChemComp-EL5:
3-[(2Z)-2-({3-(2-carboxyethyl)-5-[(E)-(4-ethenyl-3-methyl-5-oxo-1,5-dihydro-2H-pyrrol-2-ylidene)methyl]-4-methyl-1H-pyrrol-2-yl}methylidene)-5-{(Z)-[(3E,4S)-3-ethylidene-4-methyl-5-oxopyrrolidin-2-ylidene]methyl}-4-methyl-2H-pyrrol-3-yl]propanoic acid

ChemComp-P33:
3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL / precipitant*YM

ChemComp-BLA:
BILIVERDINE IX ALPHA

Source
  • stigmatella aurantiaca (bacteria)
KeywordsSIGNALING PROTEIN / Red-light receptor enzyme Bacteriophytochrome Myxobacteria Photosensory Core Domain / bacteriophytochrome myxobacterial / Red-light receptor enzyme / Photosensory Core Domain / phytochrome / SaBphP2 / time-resolved serial femtosecond crystallography / Bacteriophytochrome / myxobacteria / time-resolved serial crystallography

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