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Structure paper

TitleRedox-State-Dependent Structural Changes within a Prokaryotic 6-4 Photolyase.
Journal, issue, pagesJ. Am. Chem. Soc., Vol. 147, Page 16084-16098, Year 2025
Publish dateDec 11, 2024 (structure data deposition date)
AuthorsWang, P.H. / Hosokawa, Y. / C Soares, J. / Emmerich, H.J. / Fuchs, V. / Caramello, N. / Engilberge, S. / Bologna, A. / Rosner, C.J. / Nakamura, M. ...Wang, P.H. / Hosokawa, Y. / C Soares, J. / Emmerich, H.J. / Fuchs, V. / Caramello, N. / Engilberge, S. / Bologna, A. / Rosner, C.J. / Nakamura, M. / Watad, M. / Luo, F. / Owada, S. / Tosha, T. / Kang, J. / Tono, K. / Bessho, Y. / Nango, E. / Pierik, A.J. / Royant, A. / Tsai, M.D. / Yamamoto, J. / Maestre-Reyna, M. / Essen, L.O.
External linksJ. Am. Chem. Soc. / PubMed:40298610
MethodsX-ray diffraction
Resolution1.5 - 2.3 Å
Structure data

PDB-9hnk:
Structure of the (6-4) photolyase of Caulobacter crescentus in its oxidizd state - Singal crystal / Synchrotron
Method: X-RAY DIFFRACTION / Resolution: 1.59 Å

PDB-9hnl:
Structure of the (6-4) photolyase of Caulobacter crescentus in its oxidized state at room temperture-synchrotron
Method: X-RAY DIFFRACTION / Resolution: 2.2 Å

PDB-9hnm:
Structure of the (6-4) photolyase of Caulobacter crescentus in its dark adapted and oxidized state determined by serial femtosecond crystallography
Method: X-RAY DIFFRACTION / Resolution: 1.71 Å

PDB-9hnn:
Structure of the (6-4) photolyase of Caulobacter crescentus in its fully reduced state determined by serial femtosecond crystallography
Method: X-RAY DIFFRACTION / Resolution: 1.78 Å

PDB-9hno:
Structure of the (6-4) photolyase of Caulobacter crescentus in its iron sulfur cluster oxidized state determined by serial femtosecond crystallography
Method: X-RAY DIFFRACTION / Resolution: 2.3 Å

PDB-9q8f:
Structure of the (6-4) photolyase of Caulobacter crescentus with K48A mutation in its dark adapted and oxidized state determined by synchrotron
Method: X-RAY DIFFRACTION / Resolution: 1.5 Å

Chemicals

ChemComp-FAD:
FLAVIN-ADENINE DINUCLEOTIDE / FAD*YM

ChemComp-DLZ:
1-deoxy-1-(6,7-dimethyl-2,4-dioxo-3,4-dihydropteridin-8(2H)-yl)-D-ribitol

ChemComp-SF4:
IRON/SULFUR CLUSTER

ChemComp-HOH:
WATER

ChemComp-GOL:
GLYCEROL

ChemComp-CL:
Unknown entry

ChemComp-SO4:
SULFATE ION

ChemComp-MG:
Unknown entry

Source
  • caulobacter vibrioides (bacteria)
KeywordsFLAVOPROTEIN / DNA repair / photolyase / electron transfer / iron-sulfur cluster

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