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Structure paper

TitleSulphostin-inspired N-phosphonopiperidones as selective covalent DPP8 and DPP9 inhibitors.
Journal, issue, pagesNat Commun, Vol. 16, Page 3208-3208, Year 2025
Publish dateSep 5, 2024 (structure data deposition date)
AuthorsSewald, L. / Tabak, W.W.A. / Fehr, L. / Zolg, S. / Najdzion, M. / Verhoef, C.J.A. / Podlesainski, D. / Geiss-Friedlander, R. / Lammens, A. / Kaschani, F. ...Sewald, L. / Tabak, W.W.A. / Fehr, L. / Zolg, S. / Najdzion, M. / Verhoef, C.J.A. / Podlesainski, D. / Geiss-Friedlander, R. / Lammens, A. / Kaschani, F. / Hellerschmied, D. / Huber, R. / Kaiser, M.
External linksNat Commun / PubMed:40180908
MethodsX-ray diffraction
Resolution1.89 - 2.49 Å
Structure data

PDB-9goc:
Crystal structure of DPP9 Ser730Ala in complex with sulphostin.
Method: X-RAY DIFFRACTION / Resolution: 1.89 Å

PDB-9god:
Crystal structure of DPP9 in complex with N-phosphono-(S)-3-aminopiperidine-2-one-based inhibitor
Method: X-RAY DIFFRACTION / Resolution: 2.49 Å

PDB-9goh:
Crystal structure of DPP4 in complex with sulphostin.
Method: X-RAY DIFFRACTION / Resolution: 2.38 Å

PDB-9gon:
Crystal structure of DPP9 in complex with sulphostin
Method: X-RAY DIFFRACTION / Resolution: 1.89 Å

Chemicals

PDB-1ine:
HOW THE ANTI-(METAL CHELATE) ANTIBODY CHA255 IS SPECIFIC FOR THE METAL ION OF ITS ANTIGEN: X-RAY STRUCTURES FOR TWO FAB'(SLASH)HAPTEN COMPLEXES WITH DIFFERENT METALS IN THE CHELATE

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-PEG:
DI(HYDROXYETHYL)ETHER

ChemComp-PG5:
1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE

ChemComp-PGE:
TRIETHYLENE GLYCOL

ChemComp-HOH:
WATER

PDB-1inh:
INFLUENZA A SUBTYPE N2 NEURAMINIDASE COMPLEXED WITH AROMATIC BANA111 INHIBITOR

ChemComp-CL:
Unknown entry

ChemComp-NAG:
2-acetamido-2-deoxy-beta-D-glucopyranose

PDB-1inf:
INFLUENZA VIRUS B/LEE/40 NEURAMINIDASE COMPLEXED WITH BANA113 INHIBITOR

ChemComp-SO4:
SULFATE ION

ChemComp-NA:
Unknown entry

Source
  • homo sapiens (human)
KeywordsTRANSFERASE / Dipeptidyl peptidase / dipeptidyl peptidase inhibitor

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