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Structure paper

TitleStructural insights into the RNA binding inhibitors of the C-terminal domain of the SARS-CoV-2 nucleocapsid.
Journal, issue, pagesJ. Struct. Biol., Vol. 217, Page 108197-108197, Year 2025
Publish dateAug 30, 2023 (structure data deposition date)
AuthorsDhaka, P. / Mahto, J.K. / Singh, A. / Kumar, P. / Tomar, S.
External linksJ. Struct. Biol. / PubMed:40113149
MethodsX-ray diffraction
Resolution1.4 - 2.2 Å
Structure data

PDB-8w6w:
Crystal Structure of C-terminal domain of nucleocapsid protein from SARS-CoV-2 in complex with ampicillin
Method: X-RAY DIFFRACTION / Resolution: 2.2 Å

PDB-8zfv:
Crystal Structure of C-terminal domain of nucleocapsid protein from SARS-CoV-2 in complex with ceftriaxone
Method: X-RAY DIFFRACTION / Resolution: 2 Å

PDB-9in1:
Crystal Structure of C-terminal domain of nucleocapsid protein from SARS-CoV-2
Method: X-RAY DIFFRACTION / Resolution: 1.4 Å

Chemicals

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-AIC:
(2S,5R,6R)-6-{[(2R)-2-AMINO-2-PHENYLETHANOYL]AMINO}-3,3-DIMETHYL-7-OXO-4-THIA-1-AZABICYCLO[3.2.0]HEPTANE-2-CARBOXYLIC / antibiotic*YM

ChemComp-HOH:
WATER

ChemComp-SO4:
SULFATE ION

ChemComp-9F2:
Ceftriaxone / antibiotic*YM

ChemComp-PEG:
DI(HYDROXYETHYL)ETHER

Source
  • severe acute respiratory syndrome coronavirus 2
KeywordsVIRAL PROTEIN / SARS-CoV-2 / Nucleocapsid protein / RNA binding C-terminal domain / drugs

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