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TitleVisualizing thiazolidine ring formation in the reaction of D-cysteine and pyridoxal-5'-phosphate within L-cysteine desulfurase SufS.
Journal, issue, pagesBiochem. Biophys. Res. Commun., Vol. 754, Page 151497-151497, Year 2025
Publish dateMar 31, 2022 (structure data deposition date)
AuthorsNakamura, R. / Fujishiro, T.
External linksBiochem. Biophys. Res. Commun. / PubMed:40020322
MethodsX-ray diffraction
Resolution1.74 - 2.47 Å
Structure data

PDB-7xej:
SufS with D-cysteine for 5 min
Method: X-RAY DIFFRACTION / Resolution: 1.74 Å

PDB-7xek:
SufS with D-cysteine for 30 min
Method: X-RAY DIFFRACTION / Resolution: 1.88 Å

PDB-7xel:
SufS soaked with D-penicillamine
Method: X-RAY DIFFRACTION / Resolution: 1.8 Å

PDB-7xen:
SufS with L-penicillamine
Method: X-RAY DIFFRACTION / Resolution: 2.47 Å

PDB-7yb3:
SufS with D-cysteine for 1 min
Method: X-RAY DIFFRACTION / Resolution: 1.8 Å

Chemicals

ChemComp-9PV:
(2~{S})-2-[(~{E})-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]-3-sulfanyl-propanoic acid

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-PEG:
DI(HYDROXYETHYL)ETHER

ChemComp-PGE:
TRIETHYLENE GLYCOL

ChemComp-HOH:
WATER

ChemComp-9YX:
(2~{S},4~{S})-2-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]-1,3-thiazolidine-4-carboxylic acid

ChemComp-PG4:
TETRAETHYLENE GLYCOL / precipitant*YM

ChemComp-9ZN:
(2~{R})-3-methyl-2-[(~{E})-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]-3-sulfanyl-butanoic acid

ChemComp-DCY:
D-CYSTEINE

Source
  • bacillus subtilis subsp. subtilis str. 168 (bacteria)
KeywordsBIOSYNTHETIC PROTEIN / Cysteine desulfurase / Inhibitor / iron-sulfur cluster biosynthesis / PLP-dependent enzyme

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