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Structure paper

TitleStructural insight into the catalytic mechanism of the bifunctional enzyme l-fucokinase/GDP-fucose pyrophosphorylase.
Journal, issue, pagesJ. Biol. Chem., Vol. 301, Page 108344-108344, Year 2025
Publish dateJun 21, 2024 (structure data deposition date)
AuthorsLin, S.W. / Ko, T.P. / Chiang, H.Y. / Wu, C.G. / Hsu, M.F. / Wang, A.H. / Lin, C.H.
External linksJ. Biol. Chem. / PubMed:39993526
MethodsX-ray diffraction
Resolution2.3 - 2.45 Å
Structure data

PDB-9iip:
Fucokinase part of FKP with beta-L-fucose 1-phosphate
Method: X-RAY DIFFRACTION / Resolution: 2.45 Å

PDB-9iis:
GDP-fucose pyrophosphorylase part of FKP with a SUMO tag
Method: X-RAY DIFFRACTION / Resolution: 2.36 Å

PDB-9iit:
Full length structure of FKP in complex with GTP and GDP
Method: X-RAY DIFFRACTION / Resolution: 2.3 Å

Chemicals


ChemComp, No image

ChemComp-ED6:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-EPE:
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID / pH buffer*YM

ChemComp-ACT:
ACETATE ION

ChemComp-GTP:
GUANOSINE-5'-TRIPHOSPHATE / GTP, energy-carrying molecule*YM

ChemComp-FMT:
FORMIC ACID

ChemComp-MLA:
MALONIC ACID

ChemComp-GOL:
GLYCEROL

ChemComp-GDP:
GUANOSINE-5'-DIPHOSPHATE / GDP, energy-carrying molecule*YM

Source
  • bacteroides fragilis (bacteria)
  • saccharomyces cerevisiae s288c (yeast)
KeywordsTRANSFERASE / fucose / kinase / beta-L-fucose 1-phosphate / product / GDP-fucose / pyrophosphorylase / HEPES / beta-helix / SUMO / ATP / GTP

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