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Structure paper

TitleStructural characterization of pyruvic oxime dioxygenase, a key enzyme in heterotrophic nitrification.
Journal, issue, pagesJ. Bacteriol., Vol. 207, Page e0034224-e0034224, Year 2025
Publish dateMar 3, 2023 (structure data deposition date)
AuthorsTsujino, S. / Yamada, Y. / Senda, M. / Nakamura, A. / Senda, T. / Fujiwara, T.
External linksJ. Bacteriol. / PubMed:39772954
MethodsX-ray diffraction
Resolution1.551 - 2.47 Å
Structure data

PDB-8il8:
Crystal structure of Pyruvic Oxime Dioxygenase (POD) from Alcaligenes faecalis
Method: X-RAY DIFFRACTION / Resolution: 1.769 Å

PDB-8iqa:
Crystal structure of Pyruvic Oxime Dioxygenase (POD) from Alcaligenes faecalis deleted N-terminal 18 residues
Method: X-RAY DIFFRACTION / Resolution: 1.551 Å

PDB-8ix6:
Crystal structure of Pyruvic Oxime Dioxygenase (POD) from Bradyrhizobium sp. WSM3983
Method: X-RAY DIFFRACTION / Resolution: 2.47 Å

Chemicals

ChemComp-FE2:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-NI:
NICKEL (II) ION

ChemComp-SO4:
SULFATE ION

Source
  • alcaligenes faecalis subsp. faecalis nbrc 13111 (bacteria)
  • bradyrhizobium sp. wsm3983 (bacteria)
KeywordsOXIDOREDUCTASE / class II aldolase-like / dioxygenase / non-heme iron / His-triad

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