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Structure paper

TitleA structure-based mechanism of adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase (MpaCobU) from Methylocapsa palsarum.
Journal, issue, pagesInt. J. Biol. Macromol., Vol. 280, Page 136021-136021, Year 2024
Publish dateFeb 23, 2024 (structure data deposition date)
AuthorsNam, Y. / Ahn, Y.Y. / Kim, B.M. / Kim, K. / Lee, J.H. / Do, H.
External linksInt. J. Biol. Macromol. / PubMed:39326622
MethodsX-ray diffraction
Resolution1.5 - 2.6 Å
Structure data

PDB-8yep:
Crystal structure of adenosylcobinamide kinase / adenosylcobinamide phosphate guanylyltransferase from Methylocapsa palsarum
Method: X-RAY DIFFRACTION / Resolution: 1.8 Å

PDB-8yes:
Crystal structure of adenosylcobinamide kinase / adenosylcobinamide phosphate guanylyltransferase complexed with adenosylcobinamide-phosphate
Method: X-RAY DIFFRACTION / Resolution: 2.6 Å

PDB-8yk8:
adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase -C91S
Method: X-RAY DIFFRACTION / Resolution: 1.5 Å

PDB-8ykc:
Crystal structure of adenosylcobinamide kinase / adenosylcobinamide phosphate guanylyltransferase complexed with GDP
Method: X-RAY DIFFRACTION / Resolution: 1.921 Å

Chemicals

ChemComp-PO4:
PHOSPHATE ION

ChemComp-HOH:
WATER

ChemComp-B12:
COBALAMIN

ChemComp-5AD:
5'-DEOXYADENOSINE

ChemComp-GDP:
GUANOSINE-5'-DIPHOSPHATE / GDP, energy-carrying molecule*YM

ChemComp-DPO:
DIPHOSPHATE

Source
  • methylocapsa palsarum (bacteria)
KeywordsTRANSFERASE / Bifunctional adenosylcobalamin biosynthesis protein / adenosylcobinamide kinase / adenosylcobinamide phosphate guanylyltransferase / CobU / Methylocapsa palsarum / Biosynthesis of cobalamin / kinase / guanylyltransferase / X-ray crystalligraphy / C91S mutant / phosphorylation / guanylylation / ping-pong mechanism / ternary complex mechanism / adenosylcobinamide-phosphate

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