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Structure paper

TitleUbiquitin-derived artificial binding proteins targeting oncofetal fibronectin reveal scaffold plasticity by beta-strand slippage.
Journal, issue, pagesCommun Biol, Vol. 7, Page 907-907, Year 2024
Publish dateJun 14, 2023 (structure data deposition date)
AuthorsKatzschmann, A. / Haupts, U. / Reimann, A. / Settele, F. / Gloser-Braunig, M. / Fiedler, E. / Parthier, C.
External linksCommun Biol / PubMed:39068227
MethodsX-ray diffraction
Resolution2.2 - 2.32 Å
Structure data

PDB-8peq:
Complex of diubiquitin-derived artificial binding protein (Affilin) variant Af2 with its target oncofetal fibronectin (fragment 7B8)
Method: X-RAY DIFFRACTION / Resolution: 2.32 Å

PDB-8pf0:
Diubiquitin-derived artificial binding protein (Affilin) variant Af1 specific to oncofetal fibronectin
Method: X-RAY DIFFRACTION / Resolution: 2.2 Å

Chemicals

ChemComp-SO4:
SULFATE ION

ChemComp-HOH:
WATER

ChemComp-CU:
COPPER (II) ION

ChemComp-IMD:
IMIDAZOLE

Source
  • homo sapiens (human)
KeywordsDE NOVO PROTEIN / extra domain B / EDB / oncofetal fibronectin / ubiquitin / diubiqutin / Affilin / beta strand register shift / strand slippage / scaffold / artificial binding protein / plasticity / directed evolution

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