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Structure paper

TitleAn ancestral fold reveals the evolutionary link between RNA polymerase and ribosomal proteins.
Journal, issue, pagesNat Commun, Vol. 15, Page 5938-5938, Year 2024
Publish dateJun 28, 2023 (structure data deposition date)
AuthorsYagi, S. / Tagami, S.
External linksNat Commun / PubMed:39025855
MethodsX-ray diffraction
Resolution1.302 - 2.505 Å
Structure data

PDB-8jvn:
Crystal structure of the mk2h_deltaMILPYS peptide homodimer, DZBB form
Method: X-RAY DIFFRACTION / Resolution: 1.404 Å

PDB-8jvo:
Crystal structure of the chemically synthesized mk2h_deltaMILPYS peptide homodimer, DZBB form
Method: X-RAY DIFFRACTION / Resolution: 1.701 Å

PDB-8jvp:
Crystal structure of the dimeric DZBB fold protein Ph1
Method: X-RAY DIFFRACTION / Resolution: 1.302 Å

PDB-8jvq:
Crystal structure of the dimeric RIFT fold protein Ph1_DG
Method: X-RAY DIFFRACTION / Resolution: 1.401 Å

PDB-8jvr:
Crystal structure of the dimeric RIFT fold protein Ph1_GG
Method: X-RAY DIFFRACTION / Resolution: 1.794 Å

PDB-8jvs:
Crystal structure of the chimeric protein tkoL2_v1
Method: X-RAY DIFFRACTION / Resolution: 1.5 Å

PDB-8jvt:
Crystal structure of the chimeric protein mkaL2_v1
Method: X-RAY DIFFRACTION / Resolution: 2.106 Å

PDB-8jvu:
Crystal structure of the chimeric protein tkoL2_v1.2
Method: X-RAY DIFFRACTION / Resolution: 2.505 Å

PDB-8jvv:
Crystal structure of the chimeric protein mkaL2_v1.1
Method: X-RAY DIFFRACTION / Resolution: 2.3 Å

PDB-8jvw:
Crystal structure of the dimeric DZBB fold protein tkoL2_v1.2_Z
Method: X-RAY DIFFRACTION / Resolution: 1.806 Å

PDB-8jvx:
Crystal structure of the dimeric DZBB fold protein mkaL2_v1.2_Z
Method: X-RAY DIFFRACTION / Resolution: 1.801 Å

PDB-8jvy:
Crystal structure of the chimeric protein tkoL2_v1_turn with shorten loop 1
Method: X-RAY DIFFRACTION / Resolution: 1.895 Å

PDB-8jvz:
Crystal structure of the circular-permutated protein mkaL2_v1_SH3
Method: X-RAY DIFFRACTION / Resolution: 1.892 Å

Chemicals

ChemComp-SO4:
SULFATE ION

ChemComp-HOH:
WATER

ChemComp-CIT:
CITRIC ACID

ChemComp-ACY:
ACETIC ACID

ChemComp-GLY:
GLYCINE

Source
  • synthetic construct (others)
KeywordsDNA BINDING PROTEIN / Double zeta beta barrel / RIFT barrel / RIBOSOMAL PROTEIN / OB fold / SH3 fold

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