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Structure paper

TitleNanopore tweezers show fractional-nucleotide translocation in sequence-dependent pausing by RNA polymerase.
Journal, issue, pagesProc. Natl. Acad. Sci. USA, Vol. 121, Page e2321017121-e2321017121, Year 2024
Publish dateSep 4, 2023 (structure data deposition date)
AuthorsNova, I.C. / Craig, J.M. / Mazumder, A. / Laszlo, A.H. / Derrington, I.M. / Noakes, M.T. / Brinkerhoff, H. / Yang, S. / Vahedian-Movahed, H. / Li, L. ...Nova, I.C. / Craig, J.M. / Mazumder, A. / Laszlo, A.H. / Derrington, I.M. / Noakes, M.T. / Brinkerhoff, H. / Yang, S. / Vahedian-Movahed, H. / Li, L. / Zhang, Y. / Bowman, J.L. / Huang, J.R. / Mount, J.W. / Ebright, R.H. / Gundlach, J.H.
External linksProc. Natl. Acad. Sci. USA / PubMed:38990947
MethodsX-ray diffraction
Resolution2.512 - 3.165 Å
Structure data

PDB-8w8n:
Thermus thermophilus initiation transcription complex in the pre-translocated state
Method: X-RAY DIFFRACTION / Resolution: 2.693 Å

PDB-8w8o:
Thermus thermophilus initiation complex in the half-translocated state
Method: X-RAY DIFFRACTION / Resolution: 2.512 Å

PDB-8w8p:
Thermus thermophilus initiation transcription complex containing CMPcPP in the post-translocated state
Method: X-RAY DIFFRACTION / Resolution: 3.165 Å

Chemicals

ChemComp-MG:
Unknown entry

ChemComp-ZN:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-2TM:
5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]cytidine

Source
  • thermus thermophilus hb8 (bacteria)
  • synthetic construct (others)
KeywordsTRANSCRIPTION/DNA/RNA / Thermus thermophilus / RNA polymerase / pre-translocation / transcription / TRANSCRIPTION-DNA-RNA complex / transcription initiation / half-translocated / TRANSLATION / post-translocated / CMPcPP

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