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Structure paper

TitleStructural Comparison of Substrate Binding Sites in Dehaloperoxidase A and B.
Journal, issue, pagesBiochemistry, Vol. 63, Page 1761-1773, Year 2024
Publish dateJan 8, 2024 (structure data deposition date)
AuthorsAktar, M.S. / de Serrano, V. / Ghiladi, R.A. / Franzen, S.
External linksBiochemistry / PubMed:38959050
MethodsX-ray diffraction
Resolution1.4 - 2.03 Å
Structure data

PDB-8vkc:
Crystal structure of dehaloperoxidase A in complex with substrate 4-nitrophenol
Method: X-RAY DIFFRACTION / Resolution: 2.03 Å

PDB-8vkd:
Crystal structure of dehaloperoxidase A in complex with substrate 4-nitrocatechol
Method: X-RAY DIFFRACTION / Resolution: 1.4 Å

PDB-8vsk:
Crystal structure of Dehaloperoxidase A in complex with substrate 2,4-dibromophenol
Method: X-RAY DIFFRACTION / Resolution: 1.515 Å

PDB-8vzr:
Crystal structure of dehaloperoxidase A in complex with substrate 4-bromo-o-cresol
Method: X-RAY DIFFRACTION / Resolution: 1.64 Å

Chemicals

ChemComp-HEM:
PROTOPORPHYRIN IX CONTAINING FE

ChemComp-NPO:
P-NITROPHENOL

ChemComp-GOL:
GLYCEROL

ChemComp-SO4:
SULFATE ION

ChemComp-HOH:
WATER

ChemComp-PEG:
DI(HYDROXYETHYL)ETHER

ChemComp-4NC:
4-NITROCATECHOL

ChemComp-DMS:
DIMETHYL SULFOXIDE / DMSO, precipitant*YM

ChemComp-OXY:
OXYGEN MOLECULE

ChemComp-Y8I:
2,4-bis(bromanyl)phenol

ChemComp-MWJ:
4-bromo-2-methylphenol

ChemComp-PG4:
TETRAETHYLENE GLYCOL / precipitant*YM

Source
  • amphitrite ornata (invertebrata)
KeywordsOXIDOREDUCTASE / peroxidase / peroxigenase / oxidase / oxigenase / globin / heme cofactor / oxigen binding / hydrogen peroxide co-substrate / halphenol substrates / oxygen binding / hydrogenase co-substrate / halophenol substrates / oxygenase / halophenol binding / substrates / peroxidsase / peroxygenase / hydrogen preoxide cosubstrate / substrate

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