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Structure paper

TitleHuman gut microbes express functionally distinct endoglycosidases to metabolize the same N-glycan substrate.
Journal, issue, pagesNat Commun, Vol. 15, Page 5123-5123, Year 2024
Publish dateSep 9, 2023 (structure data deposition date)
AuthorsSastre, D.E. / Sultana, N. / V A S Navarro, M. / Huliciak, M. / Du, J. / Cifuente, J.O. / Flowers, M. / Liu, X. / Lollar, P. / Trastoy, B. ...Sastre, D.E. / Sultana, N. / V A S Navarro, M. / Huliciak, M. / Du, J. / Cifuente, J.O. / Flowers, M. / Liu, X. / Lollar, P. / Trastoy, B. / Guerin, M.E. / Sundberg, E.J.
External linksNat Commun / PubMed:38879612
MethodsX-ray diffraction
Resolution1.08 - 2.91 Å
Structure data

PDB-8u46:
Crystal structure of Bacteroides thetaiotaomicron VPI-5482 Endoglycosidase BT1285 D161A-E163A inactive version
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-8u47:
Crystal structure of Bacteroides thetaiotaomicron VPI-5482 Endoglycosidase BT1285
Method: X-RAY DIFFRACTION / Resolution: 1.33 Å

PDB-8u48:
Crystal structure of Bacteroides thetaiotamicron BT1285 D161A-E163A inactive Endoglycosidase in complex with high-mannose N-glycan (Man9GlcNAc2) substrate
Method: X-RAY DIFFRACTION / Resolution: 1.9 Å

PDB-8u9f:
Crystal structure of Bacteroides thetaiotamicron BT1285 in complex with NaI
Method: X-RAY DIFFRACTION / Resolution: 1.08 Å

PDB-8w01:
Crystal structure of DUF1735 domain-containing protein (GH18-like) from Bacteroides faecium at 2.7 A resolution (Space group C2)
Method: X-RAY DIFFRACTION / Resolution: 2.67 Å

PDB-8w04:
Crystal structure of DUF1735-domain containing protein (GH18-like) from Bacteroides faecium at 2.9 A resolution (Space group P21)
Method: X-RAY DIFFRACTION / Resolution: 2.91 Å

Chemicals

ChemComp-HOH:
WATER

ChemComp-PO4:
PHOSPHATE ION

ChemComp-MG:
Unknown entry

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-IOD:
IODIDE ION

Source
  • bacteroides thetaiotaomicron vpi-5482 (bacteria)
  • bacteroides faecium (bacteria)
KeywordsHYDROLASE / Endoglycosidase / artificial lectin / high mannose specific / Bacteroides / Glycosyl Hydrolase / GH18 family / High-Mannose N-glycan specific / CARBOHYDRATE / Inactive Endoglycosidase / High-Mannose specific / ENGase / Bacteroides thetaiotaomicron / I-SAD / SUGAR BINDING PROTEIN / DUF1735 domain-containing protein / GH18-like / Bacteroides faecium / gut microbiome / DUF1735-domain containing protein

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