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Structure paper

TitleThe impact of SARS-CoV-2 spike mutation on peptide presentation is HLA allomorph-specific.
Journal, issue, pagesCurr Res Struct Biol, Vol. 7, Page 100148-100148, Year 2024
Publish dateDec 5, 2023 (structure data deposition date)
AuthorsAhn, Y.M. / Maddumage, J.C. / Grant, E.J. / Chatzileontiadou, D.S.M. / Perera, W.W.J.G. / Baker, B.M. / Szeto, C. / Gras, S.
External linksCurr Res Struct Biol / PubMed:38742159
MethodsX-ray diffraction
Resolution1.65 - 3.32 Å
Structure data

PDB-8rbu:
Crystal structure of HLA-A*11:01 in complex with SVLNDILARL, an 10-mer epitope from SARS-CoV-2 Spike (S975-984)
Method: X-RAY DIFFRACTION / Resolution: 2.7 Å

PDB-8rbv:
SARS-CoV-2 Spike-derived peptide S976-984 S982A mutant (VLNDILARL) presented by HLA-A*02:01
Method: X-RAY DIFFRACTION / Resolution: 1.8 Å

PDB-8rcv:
Crystal structure of HLA B*13:01 in complex with SVLNDIFSRL, an 10-mer epitope from SARS-CoV-2 Spike (S975-984)
Method: X-RAY DIFFRACTION / Resolution: 1.65 Å

PDB-8ref:
Crystal structure of HLA B*13:01 in complex with SVLNDILARL, an 10-mer epitope from SARS-CoV-2 Spike (S975-984)
Method: X-RAY DIFFRACTION / Resolution: 1.9 Å

PDB-8rh6:
Crystal structure of HLA-A*11:01 in complex with SVLNDILSRL, an 10-mer epitope from SARS-CoV-2 Spike (S975-984)
Method: X-RAY DIFFRACTION / Resolution: 3.32 Å

PDB-8rhq:
Crystal structure of HLA-A*11:01 in complex with SVLNDIFSRL, an 10-mer epitope from SARS-CoV-2 Spike (S975-984)
Method: X-RAY DIFFRACTION / Resolution: 2 Å

Chemicals

ChemComp-PEG:
DI(HYDROXYETHYL)ETHER

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-CL:
Unknown entry

ChemComp-SO4:
SULFATE ION

ChemComp-NA:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-ACT:
ACETATE ION

ChemComp-CD:
Unknown entry

ChemComp-MG:
Unknown entry

Source
  • homo sapiens (human)
  • severe acute respiratory syndrome coronavirus 2
KeywordsIMMUNE SYSTEM / human leukocyte antigen / major histocompatibility complex / HLA-A11 / HLA-A*11:01 / SARS-CoV-2 / Spike / HLA-A2 / HLA-A*02:01 / HLA-B*13:01

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