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Structure paper

TitleStructures of LIG1 provide a mechanistic basis for understanding a lack of sugar discrimination against a ribonucleotide at the 3'-end of nick DNA.
Journal, issue, pagesJ. Biol. Chem., Vol. 300, Page 107216-107216, Year 2024
Publish dateDec 16, 2023 (structure data deposition date)
AuthorsBalu, K.E. / Gulkis, M. / Almohdar, D. / Caglayan, M.
External linksJ. Biol. Chem. / PubMed:38522520
MethodsX-ray diffraction
Resolution2.39 - 2.79 Å
Structure data

PDB-8vdn:
DNA Ligase 1 with nick dG:C
Method: X-RAY DIFFRACTION / Resolution: 2.39 Å

PDB-8vds:
DNA Ligase 1 with nick DNA 3'rG:C
Method: X-RAY DIFFRACTION / Resolution: 2.79 Å

PDB-8vdt:
DNA Ligase 1 with nick DNA 3'rA:T
Method: X-RAY DIFFRACTION / Resolution: 2.78 Å

PDB-8vzl:
DNA Ligase 1 captured with pre-step 3 ligation at the rG:C nicksite
Method: X-RAY DIFFRACTION / Resolution: 2.41 Å

PDB-8vzm:
DNA Ligase 1 captured with pre-step 3 ligation at the rA:T nicksite
Method: X-RAY DIFFRACTION / Resolution: 2.51 Å

Chemicals

ChemComp-AMP:
ADENOSINE MONOPHOSPHATE / AMP*YM

ChemComp-HOH:
WATER

ChemComp-PO4:
PHOSPHATE ION

Source
  • homo sapiens (human)
  • synthetic construct (others)
KeywordsLigase/DNA / LIG1 / DNA Ligase 1 / LIGASE / Ligase-DNA complex

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