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Structure paper

TitleStructural basis of sequence-specific cytosine deamination by double-stranded DNA deaminase toxin DddA.
Journal, issue, pagesNat. Struct. Mol. Biol., Vol. 30, Page 1153-1159, Year 2023
Publish dateAug 21, 2022 (structure data deposition date)
AuthorsYin, L. / Shi, K. / Aihara, H.
External linksNat. Struct. Mol. Biol. / PubMed:37460895
MethodsX-ray diffraction
Resolution2.39 - 2.62 Å
Structure data

PDB-8e5d:
Crystal structure of double-stranded DNA deaminase toxin DddA in complex with DNA with the target cytosine parked in the major groove
Method: X-RAY DIFFRACTION / Resolution: 2.39 Å

PDB-8e5e:
Crystal structure of double-stranded DNA deaminase toxin DddA in complex with DNA with the target cytosine flipped into the active site
Method: X-RAY DIFFRACTION / Resolution: 2.62 Å

Chemicals

ChemComp-ZN:
Unknown entry

ChemComp-MG:
Unknown entry

ChemComp-PO4:
PHOSPHATE ION

ChemComp-HOH:
WATER

Source
  • burkholderia cenocepacia (bacteria)
  • synthetic construct (others)
KeywordsTOXIN/DNA / toxin / DNA binding / deaminase / TOXIN-DNA complex

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