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Structure paper

TitleMutational and structural analyses of UdgX: insights into the active site pocket architecture and its evolution.
Journal, issue, pagesNucleic Acids Res., Vol. 51, Page 6554-6565, Year 2023
Publish dateFeb 24, 2023 (structure data deposition date)
AuthorsAroli, S. / Woo, E.J. / Gopal, B. / Varshney, U.
External linksNucleic Acids Res. / PubMed:37283083
MethodsX-ray diffraction
Resolution1.6 - 2.3 Å
Structure data

PDB-8iie:
Complex form of MsmUdgX and uracil- obtained from uracil DNA (ttUtt) post its cleavage by MsmUdgX
Method: X-RAY DIFFRACTION / Resolution: 1.67 Å

PDB-8iif:
H109A mutant of uracil DNA glycosylase X
Method: X-RAY DIFFRACTION / Resolution: 1.65 Å

PDB-8iig:
Complex form of MsmUdgX H109A mutant and uracil- obtained from uracil DNA (ttUtt) post its cleavage by UdgX H109A
Method: X-RAY DIFFRACTION / Resolution: 2.3 Å

PDB-8iih:
H109C mutant of uracil DNA glycosylase X
Method: X-RAY DIFFRACTION / Resolution: 2.13 Å

PDB-8iii:
Complex form of MsmUdgX H109C mutant and uracil- obtained from uracil DNA (ttUtt) post its cleavage by MsmUdgX H109C
Method: X-RAY DIFFRACTION / Resolution: 1.72 Å

PDB-8iij:
H109G mutant of uracil DNA glycosylase X
Method: X-RAY DIFFRACTION / Resolution: 1.83 Å

PDB-8iil:
Complex form of MsmUdgX H109G mutant and uracil- obtained from uracil DNA (ttUtt) post its cleavage by MsmUdgX H109G
Method: X-RAY DIFFRACTION / Resolution: 2.3 Å

PDB-8iim:
H109K mutant of uracil DNA glycosylase X
Method: X-RAY DIFFRACTION / Resolution: 1.6 Å

PDB-8iin:
Complex form of MsmUdgX H109K mutant and uracil- obtained from uracil DNA (ttUtt) post its cleavage by MsmUdgX H109K
Method: X-RAY DIFFRACTION / Resolution: 1.61 Å

PDB-8iio:
H109Q mutant of uracil DNA glycosylase X
Method: X-RAY DIFFRACTION / Resolution: 1.67 Å

PDB-8iip:
Complex form of MsmUdgX H109Q mutant and uracil- obtained from uracil DNA (ttUtt) post its cleavage by MsmUdgX H109Q
Method: X-RAY DIFFRACTION / Resolution: 1.63 Å

PDB-8iiq:
MsmUdgX H109S/E52N double mutant
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-8iir:
MsmUdgX H109S/Q53A double mutant
Method: X-RAY DIFFRACTION / Resolution: 2.28 Å

PDB-8iis:
MsmUdgX H109S/R184A double mutant
Method: X-RAY DIFFRACTION / Resolution: 1.61 Å

PDB-8iit:
Complex form of MsmUdgX H109S/R184A double mutant and uracil- obtained from uracil DNA (ttUtt) post its cleavage by MsmUdgX H109S/R184A
Method: X-RAY DIFFRACTION / Resolution: 1.61 Å

Chemicals

ChemComp-SF4:
IRON/SULFUR CLUSTER

ChemComp-URA:
URACIL

ChemComp-HOH:
WATER

ChemComp-GOL:
GLYCEROL

ChemComp-BME:
BETA-MERCAPTOETHANOL

Source
  • mycolicibacterium smegmatis mc2 155 (bacteria)
KeywordsDNA BINDING PROTEIN / UdgX / Uracil / Complex / DNA / H109A / Mutant / Protein / H109C / H109G / H109K / H109Q / H109S / E52N / Q53A / R184A

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