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Structure paper

TitleMolecular basis of differential HLA class I-restricted T cell recognition of a highly networked HIV peptide.
Journal, issue, pagesNat Commun, Vol. 14, Page 2929-2929, Year 2023
Publish dateJun 25, 2021 (structure data deposition date)
AuthorsLi, X. / Singh, N.K. / Collins, D.R. / Ng, R. / Zhang, A. / Lamothe-Molina, P.A. / Shahinian, P. / Xu, S. / Tan, K. / Piechocka-Trocha, A. ...Li, X. / Singh, N.K. / Collins, D.R. / Ng, R. / Zhang, A. / Lamothe-Molina, P.A. / Shahinian, P. / Xu, S. / Tan, K. / Piechocka-Trocha, A. / Urbach, J.M. / Weber, J.K. / Gaiha, G.D. / Takou Mbah, O.C. / Huynh, T. / Cheever, S. / Chen, J. / Birnbaum, M. / Zhou, R. / Walker, B.D. / Wang, J.H.
External linksNat Commun / PubMed:37217466
MethodsX-ray diffraction
Resolution1.17 - 2.9 Å
Structure data

PDB-7r7v:
Crystal structure of HLA-B*5301 complex with an HIV-1 Gag-derived epitope QW9
Method: X-RAY DIFFRACTION / Resolution: 1.6 Å

PDB-7r7w:
Crystal structure of HLA-B*5301 complex with an HIV-1 Gag-derived epitope QW9 S3T variant
Method: X-RAY DIFFRACTION / Resolution: 1.17 Å

PDB-7r7x:
Crystal structure of HLA-B*5701 complex with an HIV-1 Gag-derived epitope QW9
Method: X-RAY DIFFRACTION / Resolution: 2.099 Å

PDB-7r7y:
Crystal structure of HLA-B*5701 complex with an HIV-1 Gag-derived epitope QW9 S3T variant
Method: X-RAY DIFFRACTION / Resolution: 1.601 Å

PDB-7r7z:
Crystal structure of QW9-HLA-B*5301 specific T Cell Receptor, C3
Method: X-RAY DIFFRACTION / Resolution: 2.286 Å

PDB-7r80:
Crystal structure of C3 TCR complex with QW9-bound HLA-B*5301
Method: X-RAY DIFFRACTION / Resolution: 2.9 Å

Chemicals

ChemComp-GOL:
GLYCEROL / Glycerol

ChemComp-HOH:
WATER / Water

ChemComp-MES:
2-(N-MORPHOLINO)-ETHANESULFONIC ACID / pH buffer*YM / MES (buffer)

ChemComp-IPA:
ISOPROPYL ALCOHOL / alkaloid*YM / Isopropyl alcohol

ChemComp-SO4:
SULFATE ION / Sulfate

ChemComp-P6G:
HEXAETHYLENE GLYCOL / precipitant*YM / Polyethylene glycol

Source
  • homo sapiens (human)
  • hiv-1 06tg.ht008 (virus)
KeywordsVIRAL PROTEIN/IMMUNE SYSTEM / MHC / T Cell Immunity / Antigen Presentation / HIV / VIRAL PROTEIN-IMMUNE SYSTEM complex / IMMUNE SYSTEM

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