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Structure paper

TitleCrystal structures of the NAD+-II riboswitch reveal two distinct ligand-binding pockets.
Journal, issue, pagesNucleic Acids Res., Vol. 51, Page 2904-2914, Year 2023
Publish dateOct 27, 2022 (structure data deposition date)
AuthorsPeng, X. / Liao, W. / Lin, X. / Lilley, D.M.J. / Huang, L.
External linksNucleic Acids Res. / PubMed:36840714
MethodsX-ray diffraction
Resolution1.67 - 2.87 Å
Structure data

PDB-8hb1:
Crystal structure of NAD-II riboswitch (two strands) with NMN
Method: X-RAY DIFFRACTION / Resolution: 2.23 Å

PDB-8hb3:
Crystal structure of NAD-II riboswitch (two strands) with NR
Method: X-RAY DIFFRACTION / Resolution: 2.87 Å

PDB-8hb8:
Crystal structure of NAD-II riboswitch (single strand) with NMN
Method: X-RAY DIFFRACTION / Resolution: 2.3 Å

PDB-8hba:
Crystal structure of NAD-II riboswitch (single strand) with NAD
Method: X-RAY DIFFRACTION / Resolution: 2.64 Å

PDB-8i3z:
Crystal structure of NAD-II riboswitch (two strands) with NMN at 1.67 angstrom
Method: X-RAY DIFFRACTION / Resolution: 1.67 Å

Chemicals

ChemComp-MG:
Unknown entry

ChemComp-NMN:
BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE

ChemComp-HOH:
WATER

ChemComp-NNR:
Nicotinamide riboside

ChemComp-BA:
Unknown entry

ChemComp-NAD:
NICOTINAMIDE-ADENINE-DINUCLEOTIDE / NAD*YM

ChemComp-NA:
Unknown entry

Source
  • streptococcus parasanguinis (bacteria)
KeywordsRNA / Aptamer / Riboswitch / NAD / NMN

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