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TitleInsights into the evolution of enzymatic specificity and catalysis: From Asgard archaea to human adenylate kinases.
Journal, issue, pagesSci Adv, Vol. 8, Page eabm4089-eabm4089, Year 2022
Publish dateJun 18, 2021 (structure data deposition date)
AuthorsVerma, A. / Aberg-Zingmark, E. / Sparrman, T. / Mushtaq, A.U. / Rogne, P. / Grundstrom, C. / Berntsson, R. / Sauer, U.H. / Backman, L. / Nam, K. ...Verma, A. / Aberg-Zingmark, E. / Sparrman, T. / Mushtaq, A.U. / Rogne, P. / Grundstrom, C. / Berntsson, R. / Sauer, U.H. / Backman, L. / Nam, K. / Sauer-Eriksson, E. / Wolf-Watz, M.
External linksSci Adv / PubMed:36332013
MethodsX-ray diffraction
Resolution1.85 - 3.1 Å
Structure data

PDB-7owe:
Odinarchaeota Adenylate kinase (OdinAK) in complex with inhibitor Ap5a
Method: X-RAY DIFFRACTION / Resolution: 2.75 Å

PDB-7owh:
Odinarchaeota Adenylate kinase (OdinAK) native structure
Method: X-RAY DIFFRACTION / Resolution: 1.85 Å

PDB-7owj:
Odinarchaeota Adenylate kinase (OdinAK) in complex with GTP
Method: X-RAY DIFFRACTION / Resolution: 2.5 Å

PDB-7owk:
Odinarchaeota Adenylate kinase (OdinAK) in complex with dTTP
Method: X-RAY DIFFRACTION / Resolution: 3.1 Å

PDB-7owl:
Odinarchaeota Adenylate kinase (OdinAK) in complex with CTP
Method: X-RAY DIFFRACTION / Resolution: 2.9 Å

Chemicals

ChemComp-AP5:
BIS(ADENOSINE)-5'-PENTAPHOSPHATE

ChemComp-CL:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-GTP:
GUANOSINE-5'-TRIPHOSPHATE / GTP, energy-carrying molecule*YM

ChemComp-TTP:
THYMIDINE-5'-TRIPHOSPHATE

ChemComp-CTP:
CYTIDINE-5'-TRIPHOSPHATE

Source
  • candidatus odinarchaeota archaeon lcb_4 (archaea)
  • odinarchaeota archaeon (strain lcb_4) (archaea)
KeywordsTRANSFERASE / Phosphotransferase / Odinarchaeota Adenylate kinase / AP5A / Asgard group / GTP / dTTP / CTP

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