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TitleStructural basis for the substrate specificity switching of lysoplasmalogen-specific phospholipase D from Thermocrispum sp. RD004668.
Journal, issue, pagesBiosci. Biotechnol. Biochem., Vol. 87, Page 74-81, Year 2022
Publish dateJul 27, 2022 (structure data deposition date)
AuthorsHamana, H. / Yasutake, Y. / Kato-Murayama, M. / Hosaka, T. / Shirouzu, M. / Sakasegawa, S.I. / Sugimori, D. / Murayama, K.
External linksBiosci. Biotechnol. Biochem. / PubMed:36307380
MethodsX-ray diffraction
Resolution2.29 - 2.91 Å
Structure data

PDB-7ym0:
Lysoplasmalogen-specific phospholipase D (LyPls-PLD) with Ca2+
Method: X-RAY DIFFRACTION / Resolution: 2.91 Å

PDB-7ymp:
Crystal structure of lysoplasmalogen specific phospholipase D
Method: X-RAY DIFFRACTION / Resolution: 2.57 Å

PDB-7ymq:
Crystal structure of lysoplasmalogen specific phopholipase D, F211L mutant
Method: X-RAY DIFFRACTION / Resolution: 2.29 Å

PDB-7ymr:
Complex structure of lysoplasmalogen specific phopholipase D, F211L mutant with LPC
Method: X-RAY DIFFRACTION / Resolution: 2.69 Å

Chemicals

ChemComp-CA:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-KIP:
[(2~{R})-2-oxidanyl-3-[oxidanyl-[2-(trimethyl-$l^{5}-azanyl)ethoxy]phosphoryl]oxy-propyl] hexadecanoate

Source
  • thermocrispum sp. rd004668 (bacteria)
KeywordsHYDROLASE / phospholipase D / lisoplasmalogen / Thermocrispum / LysoPAF / lysoplasmalogen / Thermocrispum sp. RD004668 / F211L murant / lysoplasalogen / LPC

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