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TitleAllosteric regulation of glycogen breakdown by the second messenger cyclic di-GMP.
Journal, issue, pagesNat Commun, Vol. 13, Page 5834-5834, Year 2022
Publish dateFeb 26, 2022 (structure data deposition date)
AuthorsSchumacher, M.A. / Wormann, M.E. / Henderson, M. / Salinas, R. / Latoscha, A. / Al-Bassam, M.M. / Singh, K.S. / Barclay, E. / Gunka, K. / Tschowri, N.
External linksNat Commun / PubMed:36192422
MethodsX-ray diffraction
Resolution2.4 - 3.6 Å
Structure data

PDB-7u39:
Structure of the apo form of Streptomyces venezuelae GlgX, the glycogen debranching enzyme
Method: X-RAY DIFFRACTION / Resolution: 3.51 Å

PDB-7u3a:
Structure of the Streptomyces venezuelae GlgX-c-di-GMP complex
Method: X-RAY DIFFRACTION / Resolution: 3.34 Å

PDB-7u3b:
Structure of S. venezuelae GlgX bound to c-di-GMP and acarbose (pH 8.5)
Method: X-RAY DIFFRACTION / Resolution: 3.6 Å

PDB-7u3d:
Structure of S. venezuelae GlgX-c-di-GMP-acarbose complex (4.6)
Method: X-RAY DIFFRACTION / Resolution: 2.4 Å

Chemicals

ChemComp-HOH:
WATER

ChemComp-C2E:
9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)

ChemComp-A16:
4-O-(4,6-dideoxy-4-{[(1S,2S,3S,4R,5S)-2,3,4-trihydroxy-5-(hydroxymethyl)cyclohexyl]amino}-alpha-D-glucopyranosyl)-beta-D-glucopyranose

ChemComp-PO4:
PHOSPHATE ION

Source
  • streptomyces venezuelae (bacteria)
KeywordsHYDROLASE / GlgX / glycogen debranching enzyme / glycogen / Streptomyces / c-di-GMP / development / apo form / second messenger / acarbose / Streptomyces development

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