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Structure paper

TitleThe Crystal Structure of the Defense Conferring Rice Protein Os JAC1 Reveals a Carbohydrate Binding Site on the Dirigent-like Domain.
Journal, issue, pagesBiomolecules, Vol. 12, Year 2022
Publish dateFeb 12, 2022 (structure data deposition date)
AuthorsHuwa, N. / Weiergraber, O.H. / Fejzagic, A.V. / Kirsch, C. / Schaffrath, U. / Classen, T.
External linksBiomolecules / PubMed:36009020
MethodsX-ray diffraction
Resolution1.1 - 2.6 Å
Structure data

PDB-7r5z:
Monocot chimeric jacalin JAC1 from Oryza sativa: dirigent domain (crystal form 1)
Method: X-RAY DIFFRACTION / Resolution: 1.75 Å

PDB-7ywe:
Monocot chimeric jacalin JAC1 from Oryza sativa: dirigent domain (crystal form 2)
Method: X-RAY DIFFRACTION / Resolution: 2.15 Å

PDB-7ywf:
Monocot chimeric jacalin JAC1 from Oryza sativa: dirigent domain with bound galactobiose
Method: X-RAY DIFFRACTION / Resolution: 2.6 Å

PDB-7ywg:
Monocot chimeric jacalin JAC1 from Oryza sativa: lectin domain (crystal form 1)
Method: X-RAY DIFFRACTION / Resolution: 1.1 Å

PDB-7yww:
Monocot chimeric jacalin JAC1 from Oryza sativa: lectin domain (crystal form 2)
Method: X-RAY DIFFRACTION / Resolution: 1.4 Å

Chemicals

ChemComp-CA:
Unknown entry

ChemComp-CL:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-PO4:
PHOSPHATE ION

ChemComp-MPD:
(4S)-2-METHYL-2,4-PENTANEDIOL / precipitant*YM

ChemComp-TRS:
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL / pH buffer*YM

ChemComp-DTU:
(2R,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL

ChemComp-IOD:
IODIDE ION

ChemComp-1PE:
PENTAETHYLENE GLYCOL / precipitant*YM

ChemComp-GOL:
GLYCEROL

Source
  • oryza sativa (Asian cultivated rice)
KeywordsPLANT PROTEIN / Monocot chimeric jacalin / Dirigent protein / Lectin / Pathogen resistance

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