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Structure paper

TitleOrigins of glycan selectivity in streptococcal Siglec-like adhesins suggest mechanisms of receptor adaptation.
Journal, issue, pagesNat Commun, Vol. 13, Page 2753-2753, Year 2022
Publish dateAug 16, 2018 (structure data deposition date)
AuthorsBensing, B.A. / Stubbs, H.E. / Agarwal, R. / Yamakawa, I. / Luong, K. / Solakyildirim, K. / Yu, H. / Hadadianpour, A. / Castro, M.A. / Fialkowski, K.P. ...Bensing, B.A. / Stubbs, H.E. / Agarwal, R. / Yamakawa, I. / Luong, K. / Solakyildirim, K. / Yu, H. / Hadadianpour, A. / Castro, M.A. / Fialkowski, K.P. / Morrison, K.M. / Wawrzak, Z. / Chen, X. / Lebrilla, C.B. / Baudry, J. / Smith, J.C. / Sullam, P.M. / Iverson, T.M.
External linksNat Commun / PubMed:35585145
MethodsX-ray diffraction
Resolution1.03 - 2.5 Å
Structure data

PDB-6ef7:
GspB Siglec domain
Method: X-RAY DIFFRACTION / Resolution: 1.03 Å

PDB-6ef9:
GspB Siglec domain
Method: X-RAY DIFFRACTION / Resolution: 1.3 Å

PDB-6efa:
GspB Siglec + Unique domains
Method: X-RAY DIFFRACTION / Resolution: 1.6 Å

PDB-6efb:
GspB Siglec domain
Method: X-RAY DIFFRACTION / Resolution: 1.9 Å

PDB-6efc:
Hsa Siglec + Unique domains (unliganded)
Method: X-RAY DIFFRACTION / Resolution: 1.4 Å

PDB-6efd:
Hsa Siglec and Unique domains in complex with the sialyl T antigen trisaccharide
Method: X-RAY DIFFRACTION / Resolution: 1.85 Å

PDB-6eff:
NCTC10712
Method: X-RAY DIFFRACTION / Resolution: 1.6 Å

PDB-6efi:
SK678 binding region (Siglec + Unique)
Method: X-RAY DIFFRACTION / Resolution: 1.715 Å

PDB-6x3k:
Hsa Siglec and Unique domains in complex with 6S-sialy-Lewisx
Method: X-RAY DIFFRACTION / Resolution: 2.5 Å

PDB-6x3q:
Hsa Siglec and Unique domains in complex with 3'sialyl-N-acetyllactosamine trisaccharide
Method: X-RAY DIFFRACTION / Resolution: 2.15 Å

PDB-7kmj:
Hsa Siglec and Unique domains in complex with Sialyl Lewis C
Method: X-RAY DIFFRACTION / Resolution: 1.33 Å

Chemicals

ChemComp-CA:
Unknown entry

ChemComp-HOH:
WATER / Water

ChemComp-NA:
Unknown entry

ChemComp-FMT:
FORMIC ACID / Formic acid

ChemComp-GOL:
GLYCEROL / Glycerol

ChemComp-SO4:
SULFATE ION / Sulfate

ChemComp-ACT:
ACETATE ION / Acetate

ChemComp-CO:
Unknown entry

ChemComp-EDO:
1,2-ETHANEDIOL / Ethylene glycol

ChemComp-SIA:
N-acetyl-alpha-neuraminic acid / Sialic acid

Source
  • streptococcus gordonii (bacteria)
  • streptococcus gordonii str. challis (bacteria)
  • streptococcus mitis (bacteria)
  • streptococcus sanguinis sk678 (bacteria)
KeywordsSUGAR BINDING PROTEIN / lectin / CELL ADHESION / adhesin / serine rich repeat adhesin / bacterial adhesion / protein

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