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TitleMultifaceted Activities of Seven Nanobodies against Complement C4b.
Journal, issue, pagesJ Immunol, Vol. 208, Issue 9, Page 2207-2219, Year 2022
Publish dateApr 15, 2022
AuthorsKarla I De la O Becerra / Wout Oosterheert / Ramon M van den Bos / Katerina T Xenaki / Joseph H Lorent / Maartje Ruyken / Arie Schouten / Suzan H M Rooijakkers / Paul M P van Bergen En Henegouwen / Piet Gros /
PubMed AbstractCleavage of the mammalian plasma protein C4 into C4b initiates opsonization, lysis, and clearance of microbes and damaged host cells by the classical and lectin pathways of the complement system. ...Cleavage of the mammalian plasma protein C4 into C4b initiates opsonization, lysis, and clearance of microbes and damaged host cells by the classical and lectin pathways of the complement system. Dysregulated activation of C4 and other initial components of the classical pathway may cause or aggravate pathologies, such as systemic lupus erythematosus, Alzheimer disease, and schizophrenia. Modulating the activity of C4b by small-molecule or protein-based inhibitors may represent a promising therapeutic approach for preventing excessive inflammation and damage to host cells and tissue. Here, we present seven nanobodies, derived from llama () immunization, that bind to human C4b () with high affinities ranging from 3.2 nM to 14 pM. The activity of the nanobodies varies from no to complete inhibition of the classical pathway. The inhibiting nanobodies affect different steps in complement activation, in line with blocking sites for proconvertase formation, C3 substrate binding to the convertase, and regulator-mediated inactivation of C4b. For four nanobodies, we determined single-particle cryo-electron microscopy structures in complex with C4b at 3.4-4 Å resolution. The structures rationalize the observed functional effects of the nanobodies and define their mode of action during complement activation. Thus, we characterized seven anti-C4b nanobodies with diverse effects on the classical pathway of complement activation that may be explored for imaging, diagnostic, or therapeutic applications.
External linksJ Immunol / PubMed:35428691 / PubMed Central
MethodsEM (single particle)
Resolution3.39 - 3.96 Å
Structure data

EMDB-11988, PDB-7b2m:
Cryo-EM structure of complement C4b in complex with nanobody E3
Method: EM (single particle) / Resolution: 3.39 Å

EMDB-11989, PDB-7b2p:
Cryo-EM structure of complement C4b in complex with nanobody B5
Method: EM (single particle) / Resolution: 3.43 Å

EMDB-11990, PDB-7b2q:
Cryo-EM structure of complement C4b in complex with nanobody B12
Method: EM (single particle) / Resolution: 3.76 Å

EMDB-11991:
Cryo-EM density map of complement C4b in complex with nanobody G3
Method: EM (single particle) / Resolution: 3.96 Å

Chemicals

ChemComp-NAG:
2-acetamido-2-deoxy-beta-D-glucopyranose / N-Acetylglucosamine

Source
  • homo sapiens (human)
  • lama glama (llama)
  • Human (human)
KeywordsIMMUNE SYSTEM / Complement / nanobody / C4b / complement classical pathway / nanobody-antigen complex / inhibitor

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